SMTL ID : 8c7o.1 (1 other biounit)

Unliganded transcriptional pleiotropic repressor CodY from Staphylococcus aureus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: L.58, L.59, K.60, H.134 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.60 Water bridges: A:S.61 Salt bridges: A:H.134 SO4.2: 7 residues within 4Å: Chain A: I.204, A.205, S.206, R.216, M.239, K.240, G.241 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.205, A:S.206, A:S.206, A:R.216, A:G.241 SO4.3: 4 residues within 4Å: Chain A: K.60, S.61, Q.62, R.63 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.62, A:R.63 SO4.4: 3 residues within 4Å: Chain A: M.3, K.8, V.38 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.3 Salt bridges: A:K.8 SO4.5: 2 residues within 4Å: Chain A: N.138, E.139 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.139 SO4.6: 3 residues within 4Å: Chain A: T.215, R.216, S.217 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.215, A:T.215, A:R.216, A:S.217 Salt bridges: A:R.216 SO4.8: 4 residues within 4Å: Chain A: K.8, N.138, N.140, D.141 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.138, A:N.140 Salt bridges: A:K.8

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.7: 6 residues within 4Å: Chain A: V.38, L.59, R.132, V.133, H.134, D.135 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:R.132 Hydrogen bonds: A:V.133, A:H.134, A:D.135 Salt bridges: A:H.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hainzl, T. et al., Structural insights into CodY activation and DNA recognition. Nucleic Acids Res. (2023)

Release Date

2023-06-28

Peptides

Global transcriptional regulator CodY: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Global transcriptional regulator CodY

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