SMTL ID : 8c89.1

SARS-CoV-2 spike in complex with the 17T2 neutralizing antibody Fab fragment (local refinement of RBD and Fab)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: D.16, N.20, N.47, L.48 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.47 NAG-NAG.2: 3 residues within 4Å: Chain B: N.102, T.104, T.105 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:T.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Campos-Mata, L. et al., A monoclonal antibody targeting a large surface of the receptor binding motif shows pan-neutralizing SARS-CoV-2 activity. Nat Commun (2024)

Release Date

2024-01-10

Peptides

Spike protein S2': A
17T2 Fab heavy chain: B
17T2 Fab light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
H

C
L

Spike protein S2'

17T2 Fab heavy chain

17T2 Fab light chain