SMTL ID : 8ca1.1

Cryo-EM structure of the ACADVL dimer from Mus musculus.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 26 residues within 4Å: Chain A: F.215, L.217, T.218, G.223, S.224, W.250, S.252, K.300, I.458, I.461, F.462, E.463, D.467, I.468, Q.563 Chain B: R.367, Q.369, F.370, I.374, F.377, V.379, I.380, Q.436, I.437, G.440, F.443 19 PLIP interactions: 5 interactions with chain B, 14 interactions with chain A Hydrophobic interactions: B:F.443, A:W.250, A:K.300, A:I.458 Hydrogen bonds: B:Q.436, B:G.440, A:F.215, A:L.217, A:T.218, A:T.218, A:G.223, A:S.224, A:S.224, A:S.252, A:E.463, A:D.467, A:Q.563 Salt bridges: B:R.367, B:R.367 FAD.2: 28 residues within 4Å: Chain A: R.367, Q.369, F.370, I.374, F.377, V.379, I.380, Q.436, I.437, G.440, F.443, M.444 Chain B: F.215, L.217, T.218, G.223, S.224, W.250, S.252, K.300, I.458, I.461, F.462, E.463, D.467, I.468, L.471, Q.563 19 PLIP interactions: 6 interactions with chain A, 13 interactions with chain B Hydrophobic interactions: A:F.443, B:W.250, B:K.300, B:I.458 Hydrogen bonds: A:Q.369, A:Q.436, A:G.440, B:F.215, B:L.217, B:T.218, B:T.218, B:G.223, B:S.224, B:S.252, B:E.463, B:D.467, B:Q.563 Salt bridges: A:R.367, A:R.367

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yin, Z. et al., Structural insights into respiratory complex I deficiency and assembly from the mitochondrial disease-related ndufs4 -/- mouse. Embo J. (2024)

Release Date

2023-12-20

Peptides

Very long-chain specific acyl-CoA dehydrogenase, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Very long-chain specific acyl-CoA dehydrogenase, mitochondrial