SMTL ID : 8cao.1

Crystal structure of dehydrogenase domain of Cylindrospermum stagnale NADPH-Oxidase 5 (NOX5) in complex with CA24

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 18 residues within 4Å: Chain A: Y.35, H.49, P.50, F.51, T.52, H.66, I.67, R.68, V.70, G.71, S.72, W.73, T.74, I.128, T.131 Ligands: U40.2, EDO.5, EDO.7 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:Y.35, A:P.50 Hydrogen bonds: A:H.49, A:P.50, A:T.52, A:T.52, A:H.66, A:R.68, A:V.70, A:G.71, A:S.72, A:W.73, A:T.74, A:T.131 Salt bridges: A:H.49 pi-Stacking: A:F.51

1 x U40: 8-[2-(4-cyclohexylphenyl)quinolin-4-yl]carbonyl-1,3,8-triazaspiro[4.5]decane-2,4-dione(Non-covalent)

U40.2: 14 residues within 4Å: Chain A: T.52, A.126, G.127, I.128, G.129, T.131, P.132, C.258, G.259, P.260, E.281 Ligands: FAD.1, EDO.5, PEG.6 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.128, A:E.281 Hydrogen bonds: A:I.128, A:G.129

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: F.46, E.47 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.44, A:F.46, A:E.47 EDO.4: 2 residues within 4Å: Chain A: T.261, N.282 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.282, A:N.282 Water bridges: A:K.280 EDO.5: 8 residues within 4Å: Chain A: G.33, D.34, Y.35, T.52, T.110, P.132 Ligands: FAD.1, U40.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.34 EDO.7: 1 residues within 4Å: Ligands: FAD.1 No protein-ligand interaction detected (PLIP) EDO.8: 4 residues within 4Å: Chain A: E.179, D.182, N.185, F.187 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.185

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 6 residues within 4Å: Chain A: F.257, C.258, G.259, E.281, N.282 Ligands: U40.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.257, A:G.259, A:N.282 Water bridges: A:T.261, A:T.261

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reis, J. et al., Targeting ROS production through inhibition of NADPH oxidases. Nat.Chem.Biol. (2023)

Release Date

2023-09-27

Peptides

Putative ferric reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative ferric reductase

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