SMTL ID : 8cb0.1

Crystal structure of dehydrogenase domain of Cylindrospermum stagnale NADPH-Oxidase 5 (NOX5) in complex with M41 and NADP+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 16 residues within 4Å: Chain A: Y.35, H.49, P.50, F.51, T.52, H.66, I.67, R.68, V.70, G.71, S.72, W.73, T.74, I.128, T.131 Ligands: U4F.2 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.35, A:P.50 Hydrogen bonds: A:H.49, A:P.50, A:T.52, A:T.52, A:H.66, A:R.68, A:G.71, A:S.72, A:W.73, A:T.74, A:T.131 Salt bridges: A:H.49 pi-Stacking: A:F.51

1 x U4F: 15-(1,4-dioxa-8-azaspiro[4.5]decan-8-yl)-14-azatetracyclo[7.7.1.0^{2,7}.0^{13,17}]heptadeca-1(16),2(7),3,5,9,11,13(17),14-octaen-8-one(Non-covalent)

U4F.2: 7 residues within 4Å: Chain A: T.52, I.128, T.131, C.258, E.281 Ligands: FAD.1, NAP.5 No protein-ligand interaction detected (PLIP)

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: V.7, V.8, N.9, A.10, Q.84, R.85, P.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.8, A:R.85, A:R.85 EDO.4: 5 residues within 4Å: Chain A: E.179, D.182, N.185, F.187, L.189 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.185 Water bridges: A:L.189, A:L.189

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.5: 15 residues within 4Å: Chain A: A.126, I.128, G.129, L.161, N.162, R.163, T.194, C.258, G.259, P.260, G.262, L.263, E.281, N.282 Ligands: U4F.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:A.126, A:I.128, A:G.129, A:N.162, A:T.194, A:G.259, A:G.259, A:N.282 Salt bridges: A:R.163, A:R.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reis, J. et al., Targeting ROS production through inhibition of NADPH oxidases. Nat.Chem.Biol. (2023)

Release Date

2023-09-27

Peptides

Putative ferric reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative ferric reductase

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