- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.14 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x W2Q: (2~{S})-2-[3-cyclopropyl-2-(3,4-dihydro-2~{H}-chromen-6-yl)-6-methyl-phenyl]-2-cyclopropyloxy-ethanoic acid(Non-covalent)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 5 residues within 4Å:- Chain B: E.113, T.114, G.115, S.140, N.141
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.113, B:G.115
EDO.3: 4 residues within 4Å:- Chain B: K.206, R.208, S.216, E.219
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.216, B:S.216
- Water bridges: B:K.206
EDO.6: 2 residues within 4Å:- Chain C: N.4, F.5
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.4, C:N.4, C:F.5
EDO.9: 4 residues within 4Å:- Chain D: T.114, G.115, S.140, S.144
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:G.115
- Water bridges: D:Q.116
EDO.10: 9 residues within 4Å:- Chain B: F.202, K.206
- Chain D: A.126, W.129, P.130, V.131, A.154, G.155, I.156
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:W.129, D:V.131, D:G.155
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 2 residues within 4Å:- Chain B: D.85, D.137
6 PLIP interactions:2 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:D.85, B:D.137, H2O.1, H2O.2, H2O.2, H2O.3
MG.14: 2 residues within 4Å:- Chain D: D.85, D.137
6 PLIP interactions:2 interactions with chain D, 4 Ligand-Water interactions- Metal complexes: D:D.85, D:D.137, H2O.4, H2O.4, H2O.5, H2O.6
- 4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.5: 8 residues within 4Å:- Chain B: W.153
- Chain C: A.47, K.48, I.49, I.50
- Chain D: Q.189, M.199
- Ligands: W2Q.8
4 PLIP interactions:2 interactions with chain C, 1 interactions with chain B, 1 interactions with chain D- Hydrogen bonds: C:A.47, C:I.49, B:W.153
- Water bridges: D:Q.189
PEG.11: 5 residues within 4Å:- Chain B: K.194
- Chain D: Q.116, E.117, Y.120
- Ligands: W2Q.1
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain B- Hydrogen bonds: D:Q.116, D:Q.116, B:K.194
PEG.12: 6 residues within 4Å:- Chain D: L.89, E.90, K.180, I.183, G.184, R.187
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:K.180
PEG.13: 6 residues within 4Å:- Chain D: G.91, K.92, V.93, V.109, I.110, P.111
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:V.93, D:V.93
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bonnard, D. et al., Biological and Structural Analyses of New Potent Allosteric Inhibitors of HIV-1 Integrase. Antimicrob.Agents Chemother. (2023)
- Release Date
- 2023-06-07
- Peptides
- Integrase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.14 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x W2Q: (2~{S})-2-[3-cyclopropyl-2-(3,4-dihydro-2~{H}-chromen-6-yl)-6-methyl-phenyl]-2-cyclopropyloxy-ethanoic acid(Non-covalent)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bonnard, D. et al., Biological and Structural Analyses of New Potent Allosteric Inhibitors of HIV-1 Integrase. Antimicrob.Agents Chemother. (2023)
- Release Date
- 2023-06-07
- Peptides
- Integrase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D