- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NAP.2: 13 residues within 4Å:- Chain A: R.127, G.163, G.164, D.165, S.166, E.169, H.185, R.186, R.187, R.191, I.248, G.249
- Chain B: R.313
20 PLIP interactions:20 interactions with chain A- Hydrophobic interactions: A:D.165
- Hydrogen bonds: A:R.127, A:G.163, A:G.163, A:D.165, A:D.165, A:S.166, A:S.166, A:R.186
- Water bridges: A:G.164, A:G.164, A:D.165, A:D.165, A:G.249
- Salt bridges: A:H.185, A:R.186, A:R.187, A:R.191
- pi-Cation interactions: A:R.186, A:R.186
NAP.11: 13 residues within 4Å:- Chain A: R.313
- Chain B: R.127, G.163, G.164, D.165, S.166, E.169, H.185, R.186, R.187, R.191, I.248, G.249
20 PLIP interactions:20 interactions with chain B- Hydrophobic interactions: B:D.165
- Hydrogen bonds: B:R.127, B:G.163, B:G.163, B:D.165, B:S.166, B:S.166, B:R.186, B:R.186
- Water bridges: B:G.164, B:G.164, B:D.165, B:D.165, B:G.249
- Salt bridges: B:H.185, B:R.186, B:R.187, B:R.191
- pi-Cation interactions: B:R.186, B:R.186
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 4 residues within 4Å:- Chain A: D.264, D.265, E.266, K.270
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.266
- Water bridges: A:L.263, A:D.265
GOL.4: 8 residues within 4Å:- Chain A: T.56, T.57, E.58, G.139, G.141, D.149, F.152, F.153
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:T.57, A:T.57, A:E.58, A:E.58, A:G.141
- Water bridges: A:T.56, A:G.139, A:G.139, A:G.139
GOL.8: 5 residues within 4Å:- Chain A: M.54, T.55, T.56, T.57, T.138
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:M.54
GOL.12: 4 residues within 4Å:- Chain B: D.264, D.265, E.266, K.270
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.266
- Water bridges: B:L.263, B:D.265
GOL.13: 8 residues within 4Å:- Chain B: T.56, T.57, E.58, G.139, G.141, D.149, F.152, F.153
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:T.57, B:E.58, B:E.58, B:G.141
- Water bridges: B:T.56, B:T.56, B:G.139, B:G.139, B:D.149
GOL.17: 5 residues within 4Å:- Chain B: M.54, T.55, T.56, T.57, T.138
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:M.54
- 6 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.5: 6 residues within 4Å:- Chain A: K.270, V.271, Q.272, Y.277, T.278, S.279
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:E.262
DMS.6: 1 residues within 4Å:- Chain A: R.227
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.227, A:R.227
DMS.7: 6 residues within 4Å:- Chain A: E.312, R.313
- Chain B: T.147, E.169, E.170, F.173
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:R.313
- Salt bridges: A:E.312, B:E.169
- pi-Cation interactions: B:F.173
DMS.14: 6 residues within 4Å:- Chain B: K.270, V.271, Q.272, Y.277, T.278, S.279
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:E.262
DMS.15: 1 residues within 4Å:- Chain B: R.227
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.227, B:R.227
DMS.16: 6 residues within 4Å:- Chain A: T.147, E.169, E.170, F.173
- Chain B: E.312, R.313
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Salt bridges: A:E.169, B:E.312
- pi-Cation interactions: A:F.173
- Hydrogen bonds: B:R.313
- 2 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fuesser, F.T. et al., Fragment-based design of mycobacterial thioredoxin reductase inhibitors based on computational exploration of a huge virtual space. To Be Published
- Release Date
- 2024-02-07
- Peptides
- Thioredoxin reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 6 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fuesser, F.T. et al., Fragment-based design of mycobacterial thioredoxin reductase inhibitors based on computational exploration of a huge virtual space. To Be Published
- Release Date
- 2024-02-07
- Peptides
- Thioredoxin reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A