SMTL ID : 8cco.1

JAS-stabilized F-ActinII from Plasmodium falciparum

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

6 x 9UE: Jasplakinolide(Non-covalent)

9UE.1: 8 residues within 4Å: Chain A: T.196, G.199, H.200, T.201, F.202, E.207, L.245, L.250 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:T.196, A:H.200, A:F.202, A:E.207, A:L.245 Hydrogen bonds: A:G.199, A:T.201, A:T.201, A:T.201 Salt bridges: A:H.200 9UE.4: 15 residues within 4Å: Chain A: H.75, I.77, L.112, P.114, T.116, R.179, D.181 Chain B: T.196, G.199, H.200, T.201, F.202, E.207, L.245, L.250 14 PLIP interactions: 10 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:T.196, B:H.200, B:F.202, B:E.207, B:L.245, A:I.77, A:P.114 Hydrogen bonds: B:G.199, B:T.201, B:T.201, B:T.201, A:T.116, A:D.181 Salt bridges: B:H.200 9UE.7: 16 residues within 4Å: Chain A: I.290 Chain B: H.75, I.77, L.112, P.114, T.116, R.179, D.181 Chain C: T.196, G.199, H.200, T.201, F.202, E.207, L.245, L.250 15 PLIP interactions: 1 interactions with chain A, 10 interactions with chain C, 4 interactions with chain B Hydrophobic interactions: A:I.290, C:T.196, C:H.200, C:F.202, C:E.207, C:L.245, B:I.77, B:P.114 Hydrogen bonds: C:G.199, C:T.201, C:T.201, C:T.201, B:T.116, B:D.181 Salt bridges: C:H.200 9UE.10: 16 residues within 4Å: Chain B: I.290 Chain C: H.75, I.77, L.112, P.114, T.116, R.179, D.181 Chain D: T.196, G.199, H.200, T.201, F.202, E.207, L.245, L.250 15 PLIP interactions: 10 interactions with chain D, 1 interactions with chain B, 4 interactions with chain C Hydrophobic interactions: D:T.196, D:H.200, D:F.202, D:E.207, D:L.245, B:I.290, C:I.77, C:P.114 Hydrogen bonds: D:G.199, D:T.201, D:T.201, D:T.201, C:T.116, C:D.181 Salt bridges: D:H.200 9UE.13: 16 residues within 4Å: Chain C: I.290 Chain D: H.75, I.77, L.112, P.114, T.116, R.179, D.181 Chain E: T.196, G.199, H.200, T.201, F.202, E.207, L.245, L.250 15 PLIP interactions: 10 interactions with chain E, 4 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: E:T.196, E:H.200, E:F.202, E:E.207, E:L.245, D:I.77, D:P.114, C:I.290 Hydrogen bonds: E:G.199, E:T.201, E:T.201, E:T.201, D:T.116, D:D.181 Salt bridges: E:H.200 9UE.16: 16 residues within 4Å: Chain D: I.290 Chain E: H.75, I.77, L.112, P.114, T.116, R.179, D.181 Chain F: T.196, G.199, H.200, T.201, F.202, E.207, L.245, L.250 15 PLIP interactions: 10 interactions with chain F, 4 interactions with chain E, 1 interactions with chain D Hydrophobic interactions: F:T.196, F:H.200, F:F.202, F:E.207, F:L.245, E:I.77, E:P.114, D:I.290 Hydrogen bonds: F:G.199, F:T.201, F:T.201, F:T.201, E:T.116, E:D.181 Salt bridges: F:H.200

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 15 residues within 4Å: Chain A: G.15, S.16, G.17, M.18, K.20, G.158, D.159, K.215, E.216, G.305, T.306, M.308, Y.309, K.339 Ligands: MG.3 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:S.16, A:G.17, A:M.18, A:M.18, A:D.159, A:D.159, A:K.215, A:E.216, A:E.216, A:G.305 Salt bridges: A:K.20, A:K.20, A:K.339 pi-Stacking: A:Y.309 ADP.5: 15 residues within 4Å: Chain B: G.15, S.16, G.17, M.18, K.20, G.158, D.159, K.215, E.216, G.305, T.306, M.308, Y.309, K.339 Ligands: MG.6 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:S.16, B:G.17, B:M.18, B:M.18, B:D.159, B:D.159, B:K.215, B:E.216, B:E.216, B:G.305 Salt bridges: B:K.20, B:K.20, B:K.339 pi-Stacking: B:Y.309 ADP.8: 15 residues within 4Å: Chain C: G.15, S.16, G.17, M.18, K.20, G.158, D.159, K.215, E.216, G.305, T.306, M.308, Y.309, K.339 Ligands: MG.9 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:S.16, C:G.17, C:M.18, C:M.18, C:D.159, C:D.159, C:K.215, C:E.216, C:E.216, C:G.305 Salt bridges: C:K.20, C:K.20, C:K.339 pi-Stacking: C:Y.309 ADP.11: 15 residues within 4Å: Chain D: G.15, S.16, G.17, M.18, K.20, G.158, D.159, K.215, E.216, G.305, T.306, M.308, Y.309, K.339 Ligands: MG.12 14 PLIP interactions: 14 interactions with chain D Hydrogen bonds: D:S.16, D:G.17, D:M.18, D:M.18, D:D.159, D:D.159, D:K.215, D:E.216, D:E.216, D:G.305 Salt bridges: D:K.20, D:K.20, D:K.339 pi-Stacking: D:Y.309 ADP.14: 15 residues within 4Å: Chain E: G.15, S.16, G.17, M.18, K.20, G.158, D.159, K.215, E.216, G.305, T.306, M.308, Y.309, K.339 Ligands: MG.15 14 PLIP interactions: 14 interactions with chain E Hydrogen bonds: E:S.16, E:G.17, E:M.18, E:M.18, E:D.159, E:D.159, E:K.215, E:E.216, E:E.216, E:G.305 Salt bridges: E:K.20, E:K.20, E:K.339 pi-Stacking: E:Y.309 ADP.17: 15 residues within 4Å: Chain F: G.15, S.16, G.17, M.18, K.20, G.158, D.159, K.215, E.216, G.305, T.306, M.308, Y.309, K.339 Ligands: MG.18 14 PLIP interactions: 14 interactions with chain F Hydrogen bonds: F:S.16, F:G.17, F:M.18, F:M.18, F:D.159, F:D.159, F:K.215, F:E.216, F:E.216, F:G.305 Salt bridges: F:K.20, F:K.20, F:K.339 pi-Stacking: F:Y.309

6 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 2 residues within 4Å: Chain A: Q.139 Ligands: ADP.2 No protein-ligand interaction detected (PLIP) MG.6: 2 residues within 4Å: Chain B: Q.139 Ligands: ADP.5 No protein-ligand interaction detected (PLIP) MG.9: 2 residues within 4Å: Chain C: Q.139 Ligands: ADP.8 No protein-ligand interaction detected (PLIP) MG.12: 2 residues within 4Å: Chain D: Q.139 Ligands: ADP.11 No protein-ligand interaction detected (PLIP) MG.15: 2 residues within 4Å: Chain E: Q.139 Ligands: ADP.14 No protein-ligand interaction detected (PLIP) MG.18: 2 residues within 4Å: Chain F: Q.139 Ligands: ADP.17 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lopez, A.J. et al., Structure and function of Plasmodium actin II in the parasite mosquito stages. Plos Pathog. (2023)

Release Date

2023-03-01

Peptides

Actin-2: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Actin-2

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