SMTL ID : 8ccy.1

Human heparan sulfate N-deacetylase-N-sulfotransferase 1 in complex with calcium and 3'-phosphoadenosine-5'-phosphosulfate

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x A3P: ADENOSINE-3'-5'-DIPHOSPHATE(Non-covalent)

A3P.1: 15 residues within 4Å: Chain A: K.536, T.537, G.538, T.539, T.540, A.541, S.634, R.704, F.738, W.739, S.754, K.755, G.756, R.757, Y.759 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:K.536, A:T.537, A:G.538, A:T.539, A:T.540, A:T.540, A:T.540, A:R.704, A:W.739, A:W.739, A:G.756, A:R.757, A:R.757 Salt bridges: A:K.536, A:K.536, A:K.755 pi-Stacking: A:F.738, A:F.738

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: D.241, D.242, H.311, H.315, P.353 Ligands: CA.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.242, A:H.311, A:H.315 CA.3: 5 residues within 4Å: Chain A: D.242, P.353, T.412, H.451 Ligands: CA.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mycroft-West, C.J. et al., Structural and mechanistic characterization of bifunctional heparan sulfate N-deacetylase-N-sulfotransferase 1. Nat Commun (2024)

Release Date

2024-02-07

Peptides

Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1