SMTL ID : 8cd0.1

Human heparan sulfate N-deacetylase-N-sulfotransferase 1 in complex with calcium, 3'-phosphoadenosine-5'-phosphosulfate, and nanobody nAb7 (composite map and model)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x A3P: ADENOSINE-3'-5'-DIPHOSPHATE(Non-covalent)

A3P.1: 17 residues within 4Å: Chain A: Q.613, K.614, T.615, G.616, T.617, T.618, A.619, L.781, R.782, F.816, W.817, C.828, S.832, K.833, G.834, R.835, Y.837 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:Q.613, A:K.614, A:T.615, A:G.616, A:T.617, A:T.617, A:T.618, A:L.781, A:S.832, A:R.835, A:R.835 Salt bridges: A:K.614, A:K.614, A:K.676, A:K.833 pi-Stacking: A:F.816, A:F.816

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: D.320, H.389, H.393, P.431 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.320, A:H.393, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mycroft-West, C.J. et al., Structural and mechanistic characterization of bifunctional heparan sulfate N-deacetylase-N-sulfotransferase 1. Nat Commun (2024)

Release Date

2024-02-07

Peptides

Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1: A
Nanobody nAb7: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1

Nanobody nAb7

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