SMTL ID : 8cd8.1 (1 other biounit)

Ulilysin - C269A with AEBSF complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x GLY- SER- SER: GLY-SER-SER(Non-covalent)

GLY-SER-SER.1: 13 residues within 4Å: Chain A: I.206, G.208, Y.209, A.210, F.212, H.247, E.248, H.251, H.257, D.261, Y.311 Ligands: ZN.4, AES.5 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.208, A:A.210 Salt bridges: A:H.247, A:H.251, A:H.257

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: W.259, E.262, P.268, Q.281, A.282 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:W.259, A:E.262, A:P.268, A:Q.281, A:A.282 CA.3: 3 residues within 4Å: Chain A: D.273, V.275, T.278 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.273, A:V.275, H2O.4, H2O.4, H2O.9

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 5 residues within 4Å: Chain A: H.247, H.251, H.257, Y.311 Ligands: GLY-SER-SER.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.247, A:H.251, A:H.257

1 x AES: 4-(2-AMINOETHYL)BENZENESULFONYL FLUORIDE(Non-covalent)

AES.5: 13 residues within 4Å: Chain A: I.206, L.207, G.208, F.239, T.244, H.247, E.248, Y.311, V.312, D.313, D.314, M.317 Ligands: GLY-SER-SER.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.207 Hydrogen bonds: A:D.314 pi-Stacking: A:Y.311

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 4 residues within 4Å: Chain A: D.148, P.149, T.158, W.184 5 PLIP interactions: 5 interactions with chain A Water bridges: A:D.148, A:N.150, A:E.181, A:E.181, A:W.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rodriguez-Banqueri, A. et al., Structural insights into latency of the metallopeptidase ulilysin (lysargiNase) and its unexpected inhibition by a sulfonyl-fluoride inhibitor of serine peptidases. Dalton Trans (2023)

Release Date

2023-03-22

Peptides

Ulilysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ulilysin

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