SMTL ID : 8cgc.1

Structure of CSF1R in complex with a pyrollopyrimidine (compound 23)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

1 x LMR: (2S)-2-hydroxybutanedioic acid(Non-covalent)

LMR.1: 4 residues within 4Å: Chain A: K.65, K.89, S.90, T.91 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.90, A:S.90, A:T.91, A:T.91 Water bridges: A:T.91, A:T.91 Salt bridges: A:K.65

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: L.174, L.176, F.304 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.174 Water bridges: A:L.176

1 x UIK: [4-[4-[methyl-[(3-methylphenyl)methyl]amino]-7~{H}-pyrrolo[2,3-d]pyrimidin-6-yl]phenyl]methanol(Non-covalent)

UIK.3: 14 residues within 4Å: Chain A: L.58, V.66, A.84, E.134, Y.135, C.136, C.137, Y.138, G.139, R.206, L.209, F.221, A.224, R.225 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.58, A:L.58, A:L.209, A:L.209, A:F.221, A:A.224 Hydrogen bonds: A:C.136, A:C.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aarhus, T.I. et al., Synthesis and Development of Highly Selective Pyrrolo[2,3- d ]pyrimidine CSF1R Inhibitors Targeting the Autoinhibited Form. J.Med.Chem. (2023)

Release Date

2023-05-24

Peptides

Macrophage colony-stimulating factor 1 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Macrophage colony-stimulating factor 1 receptor