SMTL ID : 8ch0.1

Crystal structure of an 8-repeat consensus TPR superhelix with Gadolinium.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

3 x GD: GADOLINIUM ATOM(Non-covalent)

GD.1: 2 residues within 4Å: Chain A: D.23, E.24 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.23, A:E.24, H2O.1, H2O.2, H2O.2 GD.2: 1 residues within 4Å: Chain A: D.55 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.55, A:D.55, H2O.1 GD.3: 2 residues within 4Å: Chain A: D.57, E.58 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.57, A:D.57, A:E.58, H2O.1, H2O.2

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.4: 4 residues within 4Å: Chain A: G.54, Y.56, D.57, Q.87 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.56, A:D.57, A:Q.87 Water bridges: A:G.54, A:D.57

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.5: 6 residues within 4Å: Chain A: A.74, E.75, Y.78, S.107, E.109, A.110 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.78, A:Y.78, A:A.110 MPD.6: 4 residues within 4Å: Chain A: Y.112, N.116, Y.119, K.120 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.119, A:Y.119, A:K.120 Hydrogen bonds: A:K.120, A:K.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liutkus, M. et al., Diverse crystalline protein scaffolds through metal-dependent polymorphism. Protein Sci. (2024)

Release Date

2024-02-21

Peptides

Consensus tetratricopeptide repeat protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Consensus tetratricopeptide repeat protein