SMTL ID : 8ch4.1

Crystal structure of the ring cleaving dioxygenase 5-nitrosalicylate 1,2-dioxygenase from Bradyrhizobium sp.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

4 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: H.97, H.99, Y.105, H.137 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.97, A:H.99, A:H.137, H2O.1, H2O.2 FE.2: 4 residues within 4Å: Chain B: H.97, H.99, Y.105, H.137 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.97, B:H.99, B:H.137, H2O.3, H2O.3 FE.3: 3 residues within 4Å: Chain C: H.97, H.99, H.137 6 PLIP interactions: 3 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:H.97, C:H.99, C:H.137, H2O.4, H2O.4, H2O.5 FE.4: 4 residues within 4Å: Chain D: H.97, H.99, Y.105, H.137 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:H.97, D:H.99, D:H.137, H2O.5, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eppinger, E. et al., Crystal structure of the monocupin ring-cleaving dioxygenase 5-nitrosalicylate 1,2-dioxygenase from Bradyrhizobium sp. Acta Crystallogr D Struct Biol (2023)

Release Date

2023-07-05

Peptides

5-nitrosalicylic acid 1,2-dioxygenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

5-nitrosalicylic acid 1,2-dioxygenase