SMTL ID : 8cha.1

Fc gamma RIIa 27W/131H variant ectodomain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 5 residues within 4Å: Chain A: I.174, N.178, H.179, S.180, H.181 No protein-ligand interaction detected (PLIP)

1 x FLC: CITRATE ANION(Non-covalent)

FLC.2: 6 residues within 4Å: Chain A: K.164, S.166, H.167, L.168, D.169 Ligands: NA.10 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:H.167, A:L.168, A:D.169, A:D.169 Water bridges: A:K.164, A:K.164, A:F.165 Salt bridges: A:K.164

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 5 residues within 4Å: Chain A: H.85, Q.87, S.89, Y.90, R.91 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.87, A:R.91 Water bridges: A:H.85 Salt bridges: A:H.85 PO4.4: 2 residues within 4Å: Chain A: M.140, T.171 No protein-ligand interaction detected (PLIP) PO4.5: 4 residues within 4Å: Chain A: I.50, H.130, L.131, E.132 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.131, A:E.132 Salt bridges: A:H.130

1 x 16P: 3,6,9,12,15,18-HEXAOXAICOSANE(Non-covalent)

16P.6: 7 residues within 4Å: Chain A: W.123, W.146, K.147, K.149, P.150, I.191 Ligands: DXE.8 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.123, A:W.146 Hydrogen bonds: A:K.149

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.7: 3 residues within 4Å: Chain A: V.42, K.44, W.63 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.44

1 x DXE: 1,2-DIMETHOXYETHANE(Non-covalent)

DXE.8: 5 residues within 4Å: Chain A: S.121, E.122, W.123, W.146 Ligands: 16P.6 No protein-ligand interaction detected (PLIP)

1 x FWN: 2-[2-(2-ethoxyethoxy)ethoxy]ethanol(Non-covalent)

FWN.9: 6 residues within 4Å: Chain A: V.152, K.153, F.165, N.190, G.192, Y.193 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.165 Hydrogen bonds: A:K.153 Water bridges: A:N.190

1 x NA: SODIUM ION(Non-functional Binders)

NA.10: 4 residues within 4Å: Chain A: K.164, D.169, T.171 Ligands: FLC.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.164, A:D.169 Water bridges: A:D.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Foy, E.G. et al., Fc gamma RIIa 27W/131H variant ectodomain. To Be Published

Release Date

2024-05-22

Peptides

Low affinity immunoglobulin gamma Fc region receptor II-a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Low affinity immunoglobulin gamma Fc region receptor II-a