SMTL ID : 8chd.1 (1 other biounit)

NtUGT1 in two conformations

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: E.197, R.200, W.201, H.204 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.197 Water bridges: A:H.204 GOL.2: 5 residues within 4Å: Chain A: D.160, S.164, R.194, K.195, Y.199 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.164, A:R.194, A:R.194 GOL.3: 8 residues within 4Å: Chain A: L.82, P.83, V.86, T.90, L.94, R.98, E.197, W.201 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.197, A:W.201

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 11 residues within 4Å: Chain A: Y.278, G.282, T.283, L.284, L.289, W.305, V.306, I.307, R.308, C.309, P.310 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.284, A:W.305, A:R.308

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.5: 20 residues within 4Å: Chain A: G.24, I.27, Y.275, S.277, G.279, S.280, G.281, V.306, W.350, A.351, Q.353, A.354, H.368, G.370, W.371, N.372, S.373, E.376, Y.390, Q.393 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:S.280, A:W.350, A:A.351, A:A.351, A:Q.353, A:N.372, A:N.372, A:S.373, A:S.373, A:E.376, A:E.376, A:Y.390, A:Q.393 Water bridges: A:S.280, A:S.280, A:A.354, A:W.371 Salt bridges: A:H.368, A:H.368

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fredslund, F. et al., NtUGT1 in two conformations. To Be Published

Release Date

2024-02-21

Peptides

Glycosyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycosyltransferase

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