SMTL ID : 8ci4.1

Crystal structure of doubly S-methanethiolated rabbit M-type creatine kinase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

homo-dimer

Ligands

6 x FLC: CITRATE ANION(Non-covalent)

FLC.1: 5 residues within 4Å: Chain A: K.15, S.16, E.17, K.40, R.43 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:K.15, A:K.40 Hydrogen bonds: A:S.16 Salt bridges: A:K.15, A:K.40, A:K.40, A:R.43 FLC.2: 7 residues within 4Å: Chain A: H.7, N.8, K.9, Y.10 Chain B: E.46, G.50 Ligands: FLC.5 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:K.9 Hydrogen bonds: A:H.7, A:H.7, A:N.8, A:K.9, A:Y.10 FLC.3: 11 residues within 4Å: Chain A: T.6, D.55, Q.58, S.205, G.206, R.209 Chain B: T.6, D.55, G.206, R.209 Ligands: FLC.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.6, A:D.55, A:D.55 Salt bridges: A:H.145 FLC.4: 5 residues within 4Å: Chain B: K.15, S.16, E.17, K.40, R.43 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:K.15, B:K.40 Hydrogen bonds: B:S.16 Salt bridges: B:K.15, B:K.40, B:K.40, B:R.43 FLC.5: 7 residues within 4Å: Chain A: E.46, G.50 Chain B: H.7, N.8, K.9, Y.10 Ligands: FLC.2 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:K.9 Hydrogen bonds: B:H.7, B:H.7, B:N.8, B:K.9, B:Y.10 FLC.6: 11 residues within 4Å: Chain A: T.6, D.55, G.206, R.209 Chain B: T.6, D.55, Q.58, S.205, G.206, R.209 Ligands: FLC.3 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.6, B:T.6, B:D.55 Salt bridges: B:H.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Andersen, D.G. et al., Chemical Zymogens and Transmembrane Activation of Transcription in Synthetic Cells. Adv Mater (2024)

Release Date

2023-12-13

Peptides

Creatine kinase M-type: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Creatine kinase M-type