- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x ACT: ACETATE ION(Non-functional Binders)
ACT.7: 9 residues within 4Å:- Chain A: N.68, F.70, R.72, R.74, I.347, L.437, H.438, G.439
- Ligands: EDO.6
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:F.70
- Hydrogen bonds: A:H.438
- Salt bridges: A:R.72, A:R.74
ACT.14: 4 residues within 4Å:- Chain B: R.371, S.398, H.475, R.534
3 PLIP interactions:3 interactions with chain B- Salt bridges: B:R.371, B:H.475, B:R.534
- 2 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
TPP.9: 27 residues within 4Å:- Chain A: M.44, H.81, G.129, P.130, L.131, G.169, D.170, G.171, D.172, E.175, N.200, I.202, S.203, L.204, I.262, H.276
- Chain B: A.393, D.394, L.395, V.423, E.425, F.448, F.451, Y.454, H.487
- Ligands: EDO.1, MG.10
20 PLIP interactions:4 interactions with chain B, 16 interactions with chain A- Hydrophobic interactions: B:F.451, B:Y.454, A:L.131, A:L.204, A:L.204
- Hydrogen bonds: B:H.487, A:G.129, A:L.131, A:D.170, A:G.171, A:N.200, A:L.204
- pi-Stacking: B:F.451
- Water bridges: A:H.81, A:N.200, A:I.202, A:V.275
- Salt bridges: A:H.81, A:H.81, A:H.276
TPP.15: 27 residues within 4Å:- Chain A: A.393, D.394, L.395, V.423, E.425, F.448, F.451, Y.454, H.487
- Chain B: M.44, H.81, G.129, P.130, L.131, G.169, D.170, G.171, D.172, E.175, N.200, I.202, S.203, L.204, I.262, H.276
- Ligands: EDO.13, MG.16
22 PLIP interactions:16 interactions with chain B, 6 interactions with chain A- Hydrophobic interactions: B:L.131, A:V.423, A:F.451, A:F.451, A:Y.454
- Hydrogen bonds: B:G.129, B:L.131, B:D.170, B:D.170, B:G.171, B:E.175, B:N.200, B:L.204, A:H.487
- Water bridges: B:M.44, B:H.81, B:D.172, B:N.200, A:T.447
- Salt bridges: B:H.81, B:H.81, B:H.276
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.10: 5 residues within 4Å:- Chain A: D.170, N.200, I.202, S.203
- Ligands: TPP.9
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.170, A:I.202, H2O.2
MG.16: 5 residues within 4Å:- Chain B: D.170, N.200, I.202, S.203
- Ligands: TPP.15
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.170, B:I.202, H2O.9
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Leogrande, C. et al., Crystal structure of transketolase from Geobacillus stearothermophilus. To Be Published
- Release Date
- 2023-03-01
- Peptides
- Transketolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x ACT: ACETATE ION(Non-functional Binders)
- 2 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Leogrande, C. et al., Crystal structure of transketolase from Geobacillus stearothermophilus. To Be Published
- Release Date
- 2023-03-01
- Peptides
- Transketolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D