SMTL ID : 8cj8.1 (1 other biounit)

Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 mutant A651V in complex with L-malate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.49 Å

Oligo State

homo-tetramer

Ligands

8 x LMR: (2S)-2-hydroxybutanedioic acid(Non-covalent)

LMR.1: 10 residues within 4Å: Chain A: R.650, G.651, P.654, Q.682, M.834, K.838, L.890, R.897, Q.971, N.972 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.651, A:G.651, A:Q.682, A:N.972 Salt bridges: A:R.650, A:K.838, A:R.897 LMR.2: 10 residues within 4Å: Chain A: I.120, R.123, S.139, A.140, T.141, G.653, P.654, D.887, Y.889, R.893 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.140 Hydrogen bonds: A:R.123, A:A.140, A:G.653 Salt bridges: A:R.123, A:R.893 LMR.5: 9 residues within 4Å: Chain B: R.650, G.651, P.654, Q.682, K.838, L.890, R.897, Q.971, N.972 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.651, B:G.651, B:Q.682, B:L.970, B:N.972 Salt bridges: B:R.650, B:K.838, B:R.897 LMR.6: 9 residues within 4Å: Chain B: I.120, R.123, S.139, A.140, T.141, P.654, D.887, Y.889, R.893 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:A.140 Hydrogen bonds: B:R.123, B:S.139, B:A.140, B:R.893, B:R.893 Salt bridges: B:R.123, B:R.893 LMR.8: 10 residues within 4Å: Chain C: R.650, G.651, P.654, Q.682, M.834, K.838, L.890, R.897, Q.971, N.972 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:G.651, C:G.651, C:Q.682, C:N.972 Salt bridges: C:R.650, C:K.838, C:R.897 LMR.9: 10 residues within 4Å: Chain C: I.120, R.123, S.139, A.140, T.141, G.653, P.654, D.887, Y.889, R.893 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:A.140 Hydrogen bonds: C:R.123, C:A.140, C:G.653 Salt bridges: C:R.123, C:R.893 LMR.12: 9 residues within 4Å: Chain D: R.650, G.651, P.654, Q.682, K.838, L.890, R.897, Q.971, N.972 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:G.651, D:G.651, D:Q.682, D:L.970, D:N.972 Salt bridges: D:R.650, D:K.838, D:R.897 LMR.13: 9 residues within 4Å: Chain D: I.120, R.123, S.139, A.140, T.141, P.654, D.887, Y.889, R.893 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:A.140 Hydrogen bonds: D:R.123, D:S.139, D:A.140, D:R.893, D:R.893 Salt bridges: D:R.123, D:R.893

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: R.245 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: D.606, R.644, R.762, R.776 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain B: R.762, R.776 Ligand excluded by PLIP CL.10: 1 residues within 4Å: Chain C: R.245 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain C: D.606, R.644, R.762, R.776 Ligand excluded by PLIP CL.14: 2 residues within 4Å: Chain D: R.762, R.776 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meyer, T.J. et al., Amino acid changes that deregulate PHOSPHOENOLPYRUVATE CARBOXYLASE in plants. To Be Published

Release Date

2024-02-21

Peptides

Phosphoenolpyruvate carboxylase 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Phosphoenolpyruvate carboxylase 1

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