SMTL ID : 8ckf.1

Crystal Structure of the first bromodomain of human BRD4 L94C variant in complex with racemic 3,5-dimethylisoxazol ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

monomer

Ligands

1 x E5Q: 3-(3,5-dimethyl-1,2-oxazol-4-yl)-5-[(~{R})-oxidanyl(pyridin-3-yl)methyl]phenol(Non-covalent)

E5Q.1: 15 residues within 4Å: Chain A: W.61, P.62, F.63, Q.65, V.67, L.72, C.74, Y.77, C.116, Y.119, N.120, D.125, I.126, M.129 Ligands: V0R.2 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.61, A:F.63, A:V.67, A:L.72, A:L.72, A:Y.119, A:I.126, A:I.126 Hydrogen bonds: A:Q.65, A:N.120, A:I.126 Water bridges: A:Y.77, A:C.116, A:D.125, A:D.125

1 x V0R: 3-(3,5-dimethyl-1,2-oxazol-4-yl)-5-[(~{S})-oxidanyl(pyridin-3-yl)methyl]phenol(Non-covalent)

V0R.2: 15 residues within 4Å: Chain A: W.61, P.62, F.63, Q.65, V.67, L.72, C.74, Y.77, C.116, Y.119, N.120, D.125, I.126, M.129 Ligands: E5Q.1 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:W.61, A:W.61, A:P.62, A:F.63, A:V.67, A:L.72, A:L.72, A:Y.119, A:I.126 Hydrogen bonds: A:Q.65, A:N.120, A:I.126 Water bridges: A:Y.77, A:C.116, A:D.125, A:D.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thomas, A.M. et al., Mutate and Conjugate: A Method to Enable Rapid In-Cell Target Validation. Acs Chem.Biol. (2023)

Release Date

2023-08-02

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4