SMTL ID : 8cnd.1

Crystal structure of CREBBP-Y1482N histone acetyltransferase domain in complex with a bisubstrate inhibitor, Lys-CoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.97 Å

Oligo State

monomer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.146, C.147, H.238, C.241 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.146, A:C.147, A:H.238, A:C.241 ZN.2: 4 residues within 4Å: Chain A: C.230, C.233, C.255, C.258 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.230, A:C.233, A:C.255, A:C.258 ZN.3: 3 residues within 4Å: Chain A: C.597, C.600, C.619 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.600, A:C.619 ZN.4: 4 residues within 4Å: Chain A: C.610, C.613, H.628, H.630 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.610, A:C.613, A:H.628, A:H.630 ZN.6: 2 residues within 4Å: Chain A: H.298, C.391 No protein-ligand interaction detected (PLIP)

1 x 01K: [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]methyl (3R,20R)-20-carbamoyl-3-hydroxy-2,2-dimethyl-4,8,14,22-tetraoxo-12-thia-5,9,15,21-tetraazatricos-1-yl dihydrogen diphosphate(Non-covalent)

01K.5: 24 residues within 4Å: Chain A: I.378, S.379, Y.380, L.381, D.382, S.383, R.390, R.393, T.394, Y.397, W.419, C.421, P.423, N.429, K.439, I.440, P.441, K.442, R.445, L.446, W.449, Y.450, G.489, R.554 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:Y.397, A:W.419, A:W.419, A:P.423, A:L.446, A:W.449, A:W.449 Hydrogen bonds: A:Y.380, A:T.394, A:C.421, A:N.429, A:I.440, A:R.445, A:R.445, A:G.489, A:R.554, A:R.554 Salt bridges: A:R.390, A:R.393, A:R.393 pi-Cation interactions: A:R.445, A:R.445

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mechaly, A.E. et al., Crystal structure of CREBBP-Y1482N histone acetyltransferase domain in complex with a bisubstrate inhibitor, Lys-CoA. To Be Published

Release Date

2024-03-06

Peptides

histone acetyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

histone acetyltransferase

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