SMTL ID : 8coo.1

Solution structure of Zipcode binding protein 1 (ZBP1) KH3(DD)KH4 domains in complex with N6-Methyladenosine containing RNA

Coordinates

PDB Format Compare

Method

SOLUTION NMR

Oligo State

monomer

Ligands

1 x U- C- G- G- 6MZ- C- U: RNA_(5'-R(*(UP*CP*GP*GP*(6MZ)P*CP*U)-3')(Non-covalent)

U-C-G-G-6MZ-C-U.1: 17 residues within 4Å: Chain A: G.117, R.118, I.120, G.121, K.122, G.123, G.124, V.127, Q.131, V.138, V.139, V.140, P.141, R.142, Q.176, V.177, Q.180 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.140, A:R.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nicastro, G. et al., Direct m6A recognition by IMP1 underlays an alternative model of target selection for non-canonical methyl-readers. Nucleic Acids Res. (2023)

Release Date

2024-02-07

Peptides

Insulin-like growth factor 2 mRNA-binding protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Insulin-like growth factor 2 mRNA-binding protein 1

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