SMTL ID : 8cp5.2 (1 other biounit)

Structure of Aspartate-N-hydroxylase (FzmM)from Streptomyces sp. V2: complex with NADPH and Sulphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.54 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 31 residues within 4Å: Chain A: V.8, G.9, G.11, P.12, R.13, V.40, D.41, P.42, G.48, R.49, V.50, W.51, M.61, N.62, T.63, R.104, A.133, R.134, A.135, A.165, Q.166, G.167, H.168, L.169, N.196, L.503, D.513, A.573, A.574, G.575 Ligands: NAP.3 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:V.50, A:V.50, A:L.503 Hydrogen bonds: A:G.11, A:R.13, A:R.49, A:R.49, A:W.51, A:N.62, A:T.63, A:T.63, A:T.63, A:A.135, A:A.135, A:Q.166, A:H.168, A:H.168, A:H.168, A:G.575 Salt bridges: A:R.13 pi-Stacking: A:W.51 pi-Cation interactions: A:R.49, A:R.134

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.117, R.120, H.121 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.117, A:R.120, A:H.121 SO4.5: 7 residues within 4Å: Chain A: N.413, R.416, A.576, R.577, S.582, V.583, T.584 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.413, A:N.413, A:G.575, A:R.577, A:V.583, A:T.584 Water bridges: A:R.416 Salt bridges: A:R.416 SO4.6: 3 residues within 4Å: Chain A: Y.318, W.357, V.362 No protein-ligand interaction detected (PLIP)

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.3: 20 residues within 4Å: Chain A: L.60, M.61, N.62, R.104, R.214, G.215, L.216, G.217, L.218, N.219, D.222, S.257, R.258, R.259, Y.263, I.446, R.502, L.503, A.573 Ligands: FAD.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.218 Hydrogen bonds: A:N.62, A:L.216, A:L.218, A:N.219, A:D.222, A:S.257, A:R.258, A:R.259, A:Y.263, A:L.503 Salt bridges: A:R.258 pi-Cation interactions: A:R.258, A:R.258

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 10 residues within 4Å: Chain A: R.13, R.416, A.560, F.561, G.562, T.565, H.569, V.583, T.584, D.587 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.13, A:A.560, A:G.562, A:T.584

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rotilio, L. et al., A biosynthetic aspartate N-hydroxylase performs successive oxidations by holding intermediates at a site away from the catalytic center. J.Biol.Chem. (2023)

Release Date

2023-07-12

Peptides

FAD-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

FAD-binding protein

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