SMTL ID : 8cqh.1

Ntaya virus methyltransferase in complex with GTP and SAH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 19 residues within 4Å: Chain A: S.57, G.59, T.60, G.82, C.83, G.84, G.86, G.87, W.88, T.105, K.106, H.111, E.112, V.131, D.132, V.133, F.134, D.147, I.148 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:S.57, A:G.59, A:G.86, A:G.87, A:W.88, A:W.88, A:W.88, A:T.105, A:K.106, A:E.112, A:E.112, A:D.132, A:D.132, A:V.133 Water bridges: A:R.85, A:S.89, A:G.149

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2: 11 residues within 4Å: Chain A: K.14, L.17, N.18, L.20, F.25, R.29, S.152, P.153, R.214, S.216 Ligands: MG.3 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:K.14, A:K.14, A:L.17, A:L.20, A:S.216 Water bridges: A:R.29, A:R.29, A:R.29, A:R.29, A:R.29, A:R.58, A:R.58, A:A.151, A:R.214, A:R.214 Salt bridges: A:R.29, A:R.29, A:R.214, A:R.214 pi-Stacking: A:F.25, A:F.25

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 2 residues within 4Å: Chain A: R.29 Ligands: GTP.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krejcova, K. et al., Structural and functional insights in flavivirus NS5 proteins gained by the structure of Ntaya virus polymerase and methyltransferase. Structure (2024)

Release Date

2024-03-13

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein

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