SMTL ID : 8cqm.1

Broad-range phospholipase C from Listeria monocytogenes

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 11 residues within 4Å: Chain A: W.1, H.14, D.55, H.118, D.122, H.128, H.142, E.146 Ligands: ZN.2, FE.3, FE.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.55 GOL.5: 10 residues within 4Å: Chain B: W.1, H.14, D.55, H.118, D.122, H.128, H.142, E.146 Ligands: FE.6, FE.7 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.55

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.69, H.118, D.122 Ligands: GOL.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.69, A:H.118, A:D.122

4 x FE: FE (III) ION(Non-covalent)

FE.3: 4 residues within 4Å: Chain A: H.128, H.142, E.146 Ligands: GOL.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.128, A:H.142, A:E.146, A:E.146 FE.4: 4 residues within 4Å: Chain A: W.1, H.14, D.122 Ligands: GOL.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:W.1, A:H.14, A:D.122 FE.6: 5 residues within 4Å: Chain B: W.1, H.128, H.142, E.146 Ligands: GOL.5 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.128, B:H.142, B:E.146, B:E.146 FE.7: 4 residues within 4Å: Chain B: W.1, H.14, D.122 Ligands: GOL.5 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:W.1, B:H.14, B:D.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petrisic, N. et al., Structural basis for the unique molecular properties of broad-range phospholipase C from Listeria monocytogenes. Nat Commun (2023)

Release Date

2023-10-18

Peptides

Phospholipase C: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phospholipase C