SMTL ID : 8crf.1

Crystal structure of N-terminal SARS-CoV-2 nsp1 in complex with fragment hit 5E11 refined against anomalous diffraction data

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.15 Å

Oligo State

monomer

Ligands

1 x NT9: ~{N}-methyl-1-(4-thiophen-2-ylphenyl)methanamine(Non-covalent)

NT9.1: 7 residues within 4Å: Chain A: V.5, L.7, R.34, L.37, K.38, L.114, K.116 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.5, A:L.7, A:L.37, A:K.38, A:L.114, A:K.116, A:K.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, S. et al., High-Confidence Placement of Fragments into Electron Density Using Anomalous Diffraction-A Case Study Using Hits Targeting SARS-CoV-2 Non-Structural Protein 1. Int J Mol Sci (2023)

Release Date

2023-10-04

Peptides

Host translation inhibitor nsp1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Host translation inhibitor nsp1

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