SMTL ID : 8cri.1 (1 other biounit)

Crystal structure of LplA1 in complex with lipoic acid (Listeria monocytogenes)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x LPA: LIPOIC ACID(Non-covalent)

LPA.1: 14 residues within 4Å: Chain A: Y.40, I.47, R.73, G.78, V.80, H.82, N.88, N.127, K.135, G.138, N.139, A.140, H.151, G.152 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.140 Hydrogen bonds: A:G.78, A:N.127, A:N.139 Salt bridges: A:K.135

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: L.117, M.193, D.194, Q.195 Ligand excluded by PLIP

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 7 residues within 4Å: Chain A: I.26, L.27, L.30, L.32, V.36, I.92, K.147 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.26, A:L.32 Salt bridges: A:K.147

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 2 residues within 4Å: Chain A: N.12, K.14 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.12 Water bridges: A:K.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dienemann, J.N. et al., A Chemical Proteomic Strategy Reveals Inhibitors of Lipoate Salvage in Bacteria and Parasites. Angew.Chem.Int.Ed.Engl. (2023)

Release Date

2023-06-07

Peptides

lipoate--protein ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

lipoate--protein ligase

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