SMTL ID : 8crn.1

Streptavidin S112Y Co-TAML artificial metalloenzyme

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x VJL: Co-linked Tetra-amido macrocyclic ligand(Non-covalent)

VJL.1: 20 residues within 4Å: Chain A: N.22, L.24, S.26, Y.42, S.44, V.46, G.47, N.48, A.49, W.78, A.85, S.87, T.89, W.91, W.107, L.109, Y.111, D.127 Chain C: W.119, K.120 14 PLIP interactions: 12 interactions with chain A, 2 interactions with chain C, Hydrophobic interactions: A:N.48, A:W.78, A:W.78, A:L.109, A:Y.111, C:K.120 Hydrogen bonds: A:N.22, A:Y.42, A:S.44, A:S.44, A:N.48, A:S.87, A:D.127, C:K.120 VJL.3: 20 residues within 4Å: Chain B: N.22, L.24, S.26, Y.42, S.44, V.46, G.47, N.48, A.49, W.78, A.85, S.87, T.89, W.91, W.107, L.109, Y.111, D.127 Chain D: W.119, K.120 14 PLIP interactions: 12 interactions with chain B, 2 interactions with chain D, Hydrophobic interactions: B:W.78, B:W.78, B:L.109, B:Y.111, B:Y.111, D:W.119 Hydrogen bonds: B:N.22, B:Y.42, B:S.44, B:S.44, B:N.48, B:S.87, B:D.127, D:K.120 VJL.5: 20 residues within 4Å: Chain A: W.119, K.120 Chain C: N.22, L.24, S.26, Y.42, S.44, V.46, G.47, N.48, A.49, W.78, A.85, S.87, T.89, W.91, W.107, L.109, Y.111, D.127 13 PLIP interactions: 12 interactions with chain C, 1 interactions with chain A, Hydrophobic interactions: C:W.78, C:W.78, C:L.109, C:L.109, C:Y.111 Hydrogen bonds: C:N.22, C:Y.42, C:S.44, C:S.44, C:N.48, C:S.87, C:D.127, A:K.120 VJL.6: 20 residues within 4Å: Chain B: W.119, K.120 Chain D: N.22, L.24, S.26, Y.42, S.44, V.46, G.47, N.48, A.49, W.78, A.85, S.87, T.89, W.91, W.107, L.109, Y.111, D.127 14 PLIP interactions: 13 interactions with chain D, 1 interactions with chain B, Hydrophobic interactions: D:N.48, D:W.78, D:W.78, D:L.109, D:Y.111, D:Y.111 Hydrogen bonds: D:N.22, D:Y.42, D:S.44, D:S.44, D:N.48, D:S.87, D:D.127, B:K.120

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 8 residues within 4Å: Chain A: T.56, G.57, W.74, T.75 Chain D: T.56, G.57, W.74, T.75 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.56

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 1 residues within 4Å: Chain B: R.83 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Igareta, N.V., Streptavidin S112Y Co-TAML artificial metalloenzyme. To Be Published

Release Date

2023-10-18

Peptides

Streptavidin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Streptavidin