SMTL ID : 8crp.1

Streptavidin WT Co-TAML artificial metalloenzyme

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x VJL: Co-linked Tetra-amido macrocyclic ligand(Non-covalent)

VJL.1: 21 residues within 4Å: Chain A: N.22, L.24, S.26, Y.42, S.44, V.46, G.47, N.48, A.49, W.78, A.85, S.87, T.89, W.91, W.107, L.109, S.111, D.127 Chain C: W.119, K.120 Ligands: VJL.5 12 PLIP interactions: 11 interactions with chain A, 1 interactions with chain C, Hydrophobic interactions: A:N.48, A:W.78, A:W.78, A:L.109 Hydrogen bonds: A:N.22, A:Y.42, A:S.44, A:S.44, A:N.48, A:S.87, A:D.127 Water bridges: C:K.120 VJL.2: 20 residues within 4Å: Chain B: N.22, L.24, S.26, Y.42, S.44, V.46, G.47, N.48, A.49, W.78, A.85, S.87, T.89, W.91, W.107, L.109, S.111, D.127 Chain D: W.119, K.120 12 PLIP interactions: 10 interactions with chain B, 1 interactions with chain D, 1 Ligand-Water interactions, Hydrophobic interactions: B:W.78, B:W.78, B:L.109 Hydrogen bonds: B:N.22, B:Y.42, B:S.44, B:S.44, B:N.48, B:S.87, B:D.127, D:K.120 Metal complexes: H2O.1 VJL.5: 21 residues within 4Å: Chain A: W.119, K.120 Chain C: N.22, L.24, S.26, Y.42, S.44, V.46, G.47, N.48, A.49, W.78, A.85, S.87, T.89, W.91, W.107, L.109, S.111, D.127 Ligands: VJL.1 13 PLIP interactions: 11 interactions with chain C, 1 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: C:N.48, C:W.78, C:W.78, C:L.109 Hydrogen bonds: C:N.22, C:Y.42, C:S.44, C:S.44, C:N.48, C:S.87, C:D.127 Water bridges: A:K.120 Metal complexes: H2O.3 VJL.6: 19 residues within 4Å: Chain B: W.119, K.120 Chain D: N.22, L.24, S.26, Y.42, S.44, V.46, G.47, N.48, A.49, W.78, A.85, S.87, T.89, W.91, W.107, L.109, D.127 13 PLIP interactions: 10 interactions with chain D, 3 interactions with chain B, Hydrophobic interactions: D:W.78, D:W.78, D:L.109, B:W.119, B:W.119 Hydrogen bonds: D:N.22, D:Y.42, D:S.44, D:S.44, D:N.48, D:S.87, D:D.127, B:K.120

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 1 residues within 4Å: Chain B: R.83 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.83 SO4.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.7: 9 residues within 4Å: Chain A: D.60, A.71 Chain D: A.77, W.78, K.79, N.84, A.85, H.86, S.87 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:W.78, D:W.78, D:N.84, D:A.85, D:H.86, D:S.87, D:S.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Igareta, N.V., Streptavidin WT Co-TAML artificial metalloenzyme. To Be Published

Release Date

2023-10-18

Peptides

Streptavidin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Streptavidin

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