SMTL ID : 8crv.1

Crystal Structure of the Carbamate Kinase from Pseudomonas aeruginosa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: S.71, P.72, K.143 2 PLIP interactions: 2 interactions with chain A Water bridges: A:A.65, A:D.68 EDO.9: 3 residues within 4Å: Chain B: S.71, P.72, K.143 1 PLIP interactions: 1 interactions with chain B Water bridges: B:A.65

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 1 residues within 4Å: Chain A: R.32 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.32 FMT.10: 1 residues within 4Å: Chain B: R.32 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.32

2 x OO9: oxidanyl dihydrogen phosphate(Non-covalent)

OO9.3: 6 residues within 4Å: Chain A: G.12, G.52, N.53, G.54, P.55, K.210 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.12, A:N.53, A:G.54, A:G.187 Water bridges: A:K.210, A:K.210 Salt bridges: A:K.210 OO9.11: 6 residues within 4Å: Chain B: G.12, G.52, N.53, G.54, P.55, K.210 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.12, B:N.53, B:G.54, B:G.187 Water bridges: B:K.210, B:K.210 Salt bridges: B:K.210

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: G.11, G.12, N.13, K.210, K.268 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.12, A:N.13 Water bridges: A:A.14, A:A.14 Salt bridges: A:K.210, A:K.268 SO4.5: 3 residues within 4Å: Chain A: R.28, R.32 Chain B: K.200 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Water bridges: A:R.32, A:E.93 Salt bridges: A:R.32, B:K.200 SO4.6: 1 residues within 4Å: Chain A: R.155 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.125, A:G.128, A:R.155 Salt bridges: A:R.155 SO4.7: 3 residues within 4Å: Chain A: G.297, K.298, R.313 3 PLIP interactions: 3 interactions with chain A Water bridges: A:E.311, A:E.311 Salt bridges: A:R.313 SO4.8: 2 residues within 4Å: Chain A: N.13, R.18 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.13 Salt bridges: A:R.18 SO4.12: 5 residues within 4Å: Chain B: G.11, G.12, N.13, K.210, K.268 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.12, B:N.13 Water bridges: B:A.14, B:A.14 Salt bridges: B:K.210, B:K.268 SO4.13: 3 residues within 4Å: Chain A: K.200 Chain B: R.28, R.32 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Water bridges: B:R.32, A:S.202 Salt bridges: B:R.32, A:K.200 SO4.14: 1 residues within 4Å: Chain B: R.155 4 PLIP interactions: 4 interactions with chain B Water bridges: B:K.125, B:G.128, B:R.155 Salt bridges: B:R.155 SO4.15: 3 residues within 4Å: Chain B: G.297, K.298, R.313 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.313 SO4.16: 2 residues within 4Å: Chain B: N.13, R.18 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.13 Salt bridges: B:R.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of the Carbamate Kinase from Pseudomonas aeruginosa. To Be Published

Release Date

2022-08-10

Peptides

Carbamate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Carbamate kinase