- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x NAG- RAM: alpha-L-rhamnopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
- 2 x C5P: CYTIDINE-5'-MONOPHOSPHATE(Non-covalent)
C5P.3: 14 residues within 4Å:- Chain A: P.162, R.164, V.227, L.228, Q.229, R.264, A.265, H.266, P.267, S.286, S.301, S.302, V.303, E.306
16 PLIP interactions:16 interactions with chain A- Hydrophobic interactions: A:V.303
- Hydrogen bonds: A:P.162, A:L.228, A:R.264, A:A.265, A:S.286, A:S.286, A:S.302
- Water bridges: A:R.164, A:Q.229, A:Q.229, A:V.230, A:H.266, A:S.286
- Salt bridges: A:R.164, A:H.266
C5P.8: 14 residues within 4Å:- Chain B: P.162, R.164, V.227, L.228, Q.229, R.264, A.265, H.266, P.267, S.286, S.301, S.302, V.303, E.306
17 PLIP interactions:17 interactions with chain B- Hydrophobic interactions: B:V.303
- Hydrogen bonds: B:P.162, B:L.228, B:R.264, B:A.265, B:S.286, B:S.286, B:S.302
- Water bridges: B:R.164, B:Q.229, B:Q.229, B:V.230, B:D.233, B:H.266, B:S.286
- Salt bridges: B:R.164, B:H.266
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.4: 3 residues within 4Å:- Chain A: N.207, L.210, E.404
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.404
NA.5: 2 residues within 4Å:- Chain A: N.326, L.328
3 PLIP interactions:3 interactions with chain A- Water bridges: A:I.325, A:N.326, A:L.328
NA.9: 3 residues within 4Å:- Chain B: N.207, L.210, E.404
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Y.208
NA.10: 2 residues within 4Å:- Chain B: N.326, L.328
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.326
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Forrester, T.J.B. et al., The retaining beta-Kdo glycosyltransferase WbbB uses a double-displacement mechanism with an intermediate adduct rearrangement step. Nat Commun (2022)
- Release Date
- 2022-11-09
- Peptides
- N-acetyl glucosaminyl transferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x NAG- RAM: alpha-L-rhamnopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
- 2 x C5P: CYTIDINE-5'-MONOPHOSPHATE(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Forrester, T.J.B. et al., The retaining beta-Kdo glycosyltransferase WbbB uses a double-displacement mechanism with an intermediate adduct rearrangement step. Nat Commun (2022)
- Release Date
- 2022-11-09
- Peptides
- N-acetyl glucosaminyl transferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
B