SMTL ID : 8cso.1 (4 other biounits)

Crystal Structure of Orotidine 5'-phosphate decarboxylase from Klebsiella pneumoniae in complex with Uridine-5'-monophosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x U5P: URIDINE-5'-MONOPHOSPHATE(Non-covalent)

U5P.1: 18 residues within 4Å: Chain A: A.11, D.13, K.35, D.62, K.64, L.121, T.122, V.158, P.180, R.183, Q.192, V.210, G.212, R.213, P.214 Chain B: D.67, I.68, T.71 15 PLIP interactions: 13 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:V.158, A:P.180 Hydrogen bonds: A:K.35, A:K.64, A:T.122, A:T.122, A:Q.192, A:G.212, A:R.213, B:D.67, B:T.71 Water bridges: A:D.13, A:G.181 Salt bridges: A:R.183, A:R.213 U5P.2: 16 residues within 4Å: Chain A: D.67, I.68, T.71 Chain B: D.13, K.35, D.62, K.64, L.121, T.122, V.158, P.180, R.183, Q.192, G.212, R.213, P.214 19 PLIP interactions: 16 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:L.121, B:V.158, B:P.180 Hydrogen bonds: B:K.35, B:T.122, B:T.122, B:T.122, B:Q.192, B:G.212, B:R.213, A:D.67, A:T.71, A:T.71 Water bridges: B:D.62, B:D.62, B:I.182, B:R.183 Salt bridges: B:R.183, B:R.213

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain B: R.50, H.53, Q.54 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.50, B:Q.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Crystal Structure of Orotidine 5'-phosphate decarboxylase from Klebsiella pneumoniae in complex with Guanosine-5'-monophosphate. to be published

Release Date

2022-06-08

Peptides

Orotidine 5'-phosphate decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Orotidine 5'-phosphate decarboxylase

Related Entries With Identical Sequence