SMTL ID : 8ct9.1

CryoEM structure of human S-OPA1 assembled on lipid membrane in membrane-distal state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-34-mer

Ligands

91 x CDL: CARDIOLIPIN(Non-functional Binders)(Non-covalent)

CDL.1: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.2: 1 residues within 4Å: Chain A: R.858 Ligand excluded by PLIP CDL.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.5: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.6: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.7: 1 residues within 4Å: Chain B: R.858 Ligand excluded by PLIP CDL.8: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.9: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.10: 1 residues within 4Å: Chain C: R.858 Ligand excluded by PLIP CDL.11: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.12: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.13: 1 residues within 4Å: Chain D: R.858 Ligand excluded by PLIP CDL.14: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.15: 1 residues within 4Å: Chain E: R.858 Ligand excluded by PLIP CDL.16: 1 residues within 4Å: Chain F: R.858 Ligand excluded by PLIP CDL.17: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.18: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.19: 1 residues within 4Å: Chain G: R.858 Ligand excluded by PLIP CDL.20: 1 residues within 4Å: Chain H: R.858 Ligand excluded by PLIP CDL.21: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.22: 1 residues within 4Å: Chain I: R.858 Ligand excluded by PLIP CDL.23: 1 residues within 4Å: Chain I: E.871 Ligand excluded by PLIP CDL.24: 1 residues within 4Å: Chain J: R.858 Ligand excluded by PLIP CDL.25: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.26: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.27: 1 residues within 4Å: Chain K: R.858 Ligand excluded by PLIP CDL.28: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.29: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.30: 1 residues within 4Å: Chain L: R.858 Ligand excluded by PLIP CDL.31: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.32: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.33: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.34: 1 residues within 4Å: Chain M: R.858 Ligand excluded by PLIP CDL.35: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.36: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.37: 1 residues within 4Å: Chain N: R.858 Ligand excluded by PLIP CDL.38: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.39: 1 residues within 4Å: Chain O: R.858 Ligand excluded by PLIP CDL.40: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.41: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.42: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.43: 1 residues within 4Å: Chain P: R.858 Ligand excluded by PLIP CDL.44: 1 residues within 4Å: Chain Q: R.858 Ligand excluded by PLIP CDL.45: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.46: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.47: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.48: 1 residues within 4Å: Chain R: R.858 Ligand excluded by PLIP CDL.49: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.50: 1 residues within 4Å: Chain S: R.858 Ligand excluded by PLIP CDL.51: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.52: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.53: 1 residues within 4Å: Chain T: R.858 Ligand excluded by PLIP CDL.54: 1 residues within 4Å: Chain U: R.858 Ligand excluded by PLIP CDL.55: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.56: 1 residues within 4Å: Chain V: R.858 Ligand excluded by PLIP CDL.57: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.58: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.59: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.60: 1 residues within 4Å: Chain W: R.858 Ligand excluded by PLIP CDL.61: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.62: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.63: 2 residues within 4Å: Chain X: R.857, R.858 Ligand excluded by PLIP CDL.64: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.65: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.66: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.67: 1 residues within 4Å: Chain Y: R.858 Ligand excluded by PLIP CDL.68: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.69: 1 residues within 4Å: Chain Z: R.858 Ligand excluded by PLIP CDL.70: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.71: 1 residues within 4Å: Chain 0: R.858 Ligand excluded by PLIP CDL.72: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.73: 1 residues within 4Å: Chain 1: R.858 Ligand excluded by PLIP CDL.74: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.75: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.76: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.77: 1 residues within 4Å: Chain 2: R.858 Ligand excluded by PLIP CDL.78: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.79: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.80: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.81: 1 residues within 4Å: Chain 3: R.858 Ligand excluded by PLIP CDL.82: 1 residues within 4Å: Chain 4: R.858 Ligand excluded by PLIP CDL.83: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.84: 1 residues within 4Å: Chain 5: R.858 Ligand excluded by PLIP CDL.85: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.86: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.87: 1 residues within 4Å: Chain 6: R.858 Ligand excluded by PLIP CDL.88: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.89: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.90: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CDL.91: 1 residues within 4Å: Chain 7: R.858 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

von der Malsburg, A. et al., Structural mechanism of mitochondrial membrane remodelling by human OPA1. Nature (2023)

Release Date

2023-08-30

Peptides

Dynamin-like 120 kDa protein, mitochondrial: ABCDEFGHIJKLMNOPQRSTUVWXYZ01234567

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Y
Y

Z
Z

0
a

1
b

2
c

3
d

4
e

5
f

6
g

7
h

Dynamin-like 120 kDa protein, mitochondrial

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