SMTL ID : 8ctr.1 (3 other biounits)

Crystal Structure of dTDP-4-dehydrorhamnose reductase from Klebsiella pneumoniae with bound NADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 24 residues within 4Å: Chain A: G.15, N.17, G.18, Q.19, V.20, D.38, Y.39, G.46, D.47, L.48, T.49, A.69, A.70, A.71, T.73, L.88, Y.110, T.112, D.113, Y.136, K.140, T.159, S.160, V.162 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:V.162 Hydrogen bonds: A:G.15, A:N.17, A:Q.19, A:Q.19, A:V.20, A:Y.39, A:L.48, A:T.49, A:A.71, A:T.73, A:T.112, A:T.112, A:D.113, A:Y.136, A:K.140 Water bridges: A:G.21, A:W.161

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 3 residues within 4Å: Chain A: S.226, N.276, Q.280 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.226, A:N.276, A:Q.280 Water bridges: A:N.276, A:N.276, A:N.276

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain A: G.303, K.304 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.303

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bolejack, M.J. et al., Crystal Structure of dTDP-4-dehydrorhamnose reductase from Klebsiella pneumoniae with bound NADP. to be published

Release Date

2022-06-01

Peptides

dTDP-4-dehydrorhamnose reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

dTDP-4-dehydrorhamnose reductase

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