- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- monomer
- Ligands
- 4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 1 x LJX: (2R,3R,4R)-2-[(8P)-6-amino-2-(hex-1-yn-1-yl)-8-(thiophen-2-yl)-9H-purin-9-yl]oxolane-3,4-diol(Non-covalent)
LJX.2: 16 residues within 4Å:- Chain A: I.91, S.92, V.109, L.110, F.193, E.194, M.202, W.367, L.370, H.371, N.374, L.388, M.391, Y.392, I.395, H.399
12 PLIP interactions:12 interactions with chain A- Hydrophobic interactions: A:I.91, A:L.110, A:F.193, A:W.367, A:L.388, A:M.391, A:Y.392, A:I.395
- Hydrogen bonds: A:N.374, A:N.374
- pi-Stacking: A:F.193, A:F.193
- 1 x NA: SODIUM ION(Non-functional Binders)
- 7 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)
OLC.4: 8 residues within 4Å:- Chain A: H.100, F.158, A.159, M.165, L.166
- Ligands: OLA.27, OLA.32, OLC.40
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:F.158, A:F.158, A:L.166
- Hydrogen bonds: A:H.100
OLC.6: 9 residues within 4Å:- Chain A: G.30, Y.34, Y.392, V.396, L.397, T.400, V.404
- Ligands: OLA.7, OLC.22
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:Y.392, A:V.396, A:L.397, A:T.400, A:V.404
- Water bridges: A:G.30
OLC.22: 3 residues within 4Å:- Chain A: W.389
- Ligands: OLC.6, OLA.15
No protein-ligand interaction detected (PLIP)OLC.23: 2 residues within 4Å:- Chain A: W.57, L.58
No protein-ligand interaction detected (PLIP)OLC.38: 6 residues within 4Å:- Chain A: I.28, S.31, I.35, T.93
- Ligands: OLA.17, OLA.18
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:I.35, A:T.93
- Hydrogen bonds: A:S.31
OLC.39: 3 residues within 4Å:- Ligands: OLA.12, OLA.17, OLA.31
No protein-ligand interaction detected (PLIP)OLC.40: 5 residues within 4Å:- Chain A: H.100, G.101
- Ligands: OLC.4, CLR.9, OLA.27
1 PLIP interactions:1 interactions with chain A- Water bridges: A:H.100
- 23 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)
OLA.5: 12 residues within 4Å:- Chain A: C.53, V.56, W.57, Q.63, Y.68, V.71, A.75, I.78, L.79
- Ligands: OLA.8, OLA.19, OLA.24
Ligand excluded by PLIPOLA.7: 10 residues within 4Å:- Chain A: I.41, I.358, T.400, V.403, V.404, F.407, I.408, Y.411, R.412
- Ligands: OLC.6
Ligand excluded by PLIPOLA.8: 4 residues within 4Å:- Chain A: W.57
- Ligands: OLA.5, OLA.24, OLA.27
Ligand excluded by PLIPOLA.12: 7 residues within 4Å:- Chain A: V.82, T.90, T.93, F.95
- Ligands: OLA.17, OLA.31, OLC.39
Ligand excluded by PLIPOLA.13: 6 residues within 4Å:- Chain A: L.121, F.205, A.209, C.210, P.214, L.217
Ligand excluded by PLIPOLA.14: 8 residues within 4Å:- Chain A: F.118, L.121, A.122, I.125, D.126, V.141, I.149
- Ligands: OLA.30
Ligand excluded by PLIPOLA.15: 7 residues within 4Å:- Chain A: P.387, W.389, L.390, L.393
- Ligands: CLR.10, OLC.22, OLA.28
Ligand excluded by PLIPOLA.16: 5 residues within 4Å:- Chain A: L.44, L.47, G.48, F.407, V.428
Ligand excluded by PLIPOLA.17: 3 residues within 4Å:- Ligands: OLA.12, OLC.38, OLC.39
Ligand excluded by PLIPOLA.18: 5 residues within 4Å:- Chain A: S.32, I.35, T.36, L.39
- Ligands: OLC.38
Ligand excluded by PLIPOLA.19: 4 residues within 4Å:- Chain A: C.53, W.54, W.57
- Ligands: OLA.5
Ligand excluded by PLIPOLA.20: 4 residues within 4Å:- Chain A: A.357, I.358, G.361
- Ligands: OLA.26
Ligand excluded by PLIPOLA.21: 6 residues within 4Å:- Chain A: Y.204, L.212, V.213, L.216
- Ligands: OLA.33, PEG.35
Ligand excluded by PLIPOLA.24: 10 residues within 4Å:- Chain A: Y.68, V.71, S.72, A.75, L.79, G.143, W.154, F.158
- Ligands: OLA.5, OLA.8
Ligand excluded by PLIPOLA.25: 5 residues within 4Å:- Chain A: L.216, G.220, L.223, R.224, A.227
Ligand excluded by PLIPOLA.26: 7 residues within 4Å:- Chain A: L.212, L.215, L.216, L.219, Y.222
- Ligands: CLR.11, OLA.20
Ligand excluded by PLIPOLA.27: 6 residues within 4Å:- Chain A: F.104, F.158, L.162
- Ligands: OLC.4, OLA.8, OLC.40
Ligand excluded by PLIPOLA.28: 5 residues within 4Å:- Chain A: L.365, P.369, L.393
- Ligands: CLR.10, OLA.15
Ligand excluded by PLIPOLA.29: 3 residues within 4Å:- Chain A: Y.128, I.129, V.221
Ligand excluded by PLIPOLA.30: 2 residues within 4Å:- Chain A: L.140
- Ligands: OLA.14
Ligand excluded by PLIPOLA.31: 10 residues within 4Å:- Chain A: V.82, L.83, P.86, F.87, T.90, F.95, C.96
- Ligands: CLR.9, OLA.12, OLC.39
Ligand excluded by PLIPOLA.32: 3 residues within 4Å:- Chain A: M.165, L.166
- Ligands: OLC.4
Ligand excluded by PLIPOLA.33: 6 residues within 4Å:- Chain A: F.208, L.212, F.379
- Ligands: CLR.11, OLA.21, PEG.35
Ligand excluded by PLIP- 3 x CLR: CHOLESTEROL(Non-covalent)
CLR.9: 6 residues within 4Å:- Chain A: A.97, A.98, G.101, I.105
- Ligands: OLA.31, OLC.40
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:A.97, A:A.98, A:I.105
- Hydrogen bonds: A:A.98
- Water bridges: A:Q.188
CLR.10: 9 residues within 4Å:- Chain A: L.368, P.369, I.373, F.376, C.383, S.384, L.390
- Ligands: OLA.15, OLA.28
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:L.368, A:P.369, A:P.369, A:I.373, A:F.376, A:L.390
- Hydrogen bonds: A:S.384, A:S.384
CLR.11: 9 residues within 4Å:- Chain A: L.212, L.368, I.372, C.375, F.376, F.379, C.380
- Ligands: OLA.26, OLA.33
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:L.212, A:L.368, A:I.372, A:F.376, A:F.376, A:F.376, A:F.379
- Water bridges: A:F.379
- 1 x ETF: TRIFLUOROETHANOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shiriaeva, A. et al., GPCR Agonist-to-Antagonist Conversion: Enabling the Design of Nucleoside Functional Switches for the A 2A Adenosine Receptor. J.Med.Chem. (2022)
- Release Date
- 2022-08-31
- Peptides
- Adenosine receptor A2a,Soluble cytochrome b562: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- monomer
- Ligands
- 4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 1 x LJX: (2R,3R,4R)-2-[(8P)-6-amino-2-(hex-1-yn-1-yl)-8-(thiophen-2-yl)-9H-purin-9-yl]oxolane-3,4-diol(Non-covalent)
- 1 x NA: SODIUM ION(Non-functional Binders)
- 7 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)
- 23 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)
- 3 x CLR: CHOLESTEROL(Non-covalent)
- 1 x ETF: TRIFLUOROETHANOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shiriaeva, A. et al., GPCR Agonist-to-Antagonist Conversion: Enabling the Design of Nucleoside Functional Switches for the A 2A Adenosine Receptor. J.Med.Chem. (2022)
- Release Date
- 2022-08-31
- Peptides
- Adenosine receptor A2a,Soluble cytochrome b562: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.