SMTL ID : 8cu8.1

Cryo-EM structure of Ferritin 2 from Caenorhabditis elegans, FTN-2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-24-mer

Ligands

24 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: E.22, E.57, H.60, N.105 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.22, A:E.57, A:H.60, H2O.3 FE.2: 4 residues within 4Å: Chain B: E.22, E.57, H.60, N.105 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.22, B:E.57, B:H.60, H2O.6 FE.3: 4 residues within 4Å: Chain C: E.22, E.57, H.60, N.105 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.22, C:E.57, C:H.60, H2O.10 FE.4: 4 residues within 4Å: Chain D: E.22, E.57, H.60, N.105 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.22, D:E.57, D:H.60, H2O.14 FE.5: 4 residues within 4Å: Chain E: E.22, E.57, H.60, N.105 4 PLIP interactions: 3 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:E.22, E:E.57, E:H.60, H2O.17 FE.6: 4 residues within 4Å: Chain F: E.22, E.57, H.60, N.105 4 PLIP interactions: 3 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:E.22, F:E.57, F:H.60, H2O.21 FE.7: 4 residues within 4Å: Chain G: E.22, E.57, H.60, N.105 4 PLIP interactions: 3 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:E.22, G:E.57, G:H.60, H2O.25 FE.8: 4 residues within 4Å: Chain H: E.22, E.57, H.60, N.105 4 PLIP interactions: 3 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:E.22, H:E.57, H:H.60, H2O.28 FE.9: 4 residues within 4Å: Chain I: E.22, E.57, H.60, N.105 4 PLIP interactions: 3 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:E.22, I:E.57, I:H.60, H2O.32 FE.10: 4 residues within 4Å: Chain J: E.22, E.57, H.60, N.105 4 PLIP interactions: 3 interactions with chain J, 1 Ligand-Water interactions Metal complexes: J:E.22, J:E.57, J:H.60, H2O.36 FE.11: 4 residues within 4Å: Chain K: E.22, E.57, H.60, N.105 4 PLIP interactions: 3 interactions with chain K, 1 Ligand-Water interactions Metal complexes: K:E.22, K:E.57, K:H.60, H2O.39 FE.12: 4 residues within 4Å: Chain L: E.22, E.57, H.60, N.105 4 PLIP interactions: 3 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:E.22, L:E.57, L:H.60, H2O.43 FE.13: 4 residues within 4Å: Chain M: E.22, E.57, H.60, N.105 4 PLIP interactions: 3 interactions with chain M, 1 Ligand-Water interactions Metal complexes: M:E.22, M:E.57, M:H.60, H2O.47 FE.14: 4 residues within 4Å: Chain N: E.22, E.57, H.60, N.105 4 PLIP interactions: 3 interactions with chain N, 1 Ligand-Water interactions Metal complexes: N:E.22, N:E.57, N:H.60, H2O.50 FE.15: 4 residues within 4Å: Chain O: E.22, E.57, H.60, N.105 4 PLIP interactions: 3 interactions with chain O, 1 Ligand-Water interactions Metal complexes: O:E.22, O:E.57, O:H.60, H2O.54 FE.16: 4 residues within 4Å: Chain P: E.22, E.57, H.60, N.105 4 PLIP interactions: 3 interactions with chain P, 1 Ligand-Water interactions Metal complexes: P:E.22, P:E.57, P:H.60, H2O.57 FE.17: 4 residues within 4Å: Chain Q: E.22, E.57, H.60, N.105 4 PLIP interactions: 3 interactions with chain Q, 1 Ligand-Water interactions Metal complexes: Q:E.22, Q:E.57, Q:H.60, H2O.61 FE.18: 4 residues within 4Å: Chain R: E.22, E.57, H.60, N.105 4 PLIP interactions: 3 interactions with chain R, 1 Ligand-Water interactions Metal complexes: R:E.22, R:E.57, R:H.60, H2O.65 FE.19: 4 residues within 4Å: Chain S: E.22, E.57, H.60, N.105 4 PLIP interactions: 3 interactions with chain S, 1 Ligand-Water interactions Metal complexes: S:E.22, S:E.57, S:H.60, H2O.68 FE.20: 4 residues within 4Å: Chain T: E.22, E.57, H.60, N.105 4 PLIP interactions: 3 interactions with chain T, 1 Ligand-Water interactions Metal complexes: T:E.22, T:E.57, T:H.60, H2O.72 FE.21: 4 residues within 4Å: Chain U: E.22, E.57, H.60, N.105 4 PLIP interactions: 3 interactions with chain U, 1 Ligand-Water interactions Metal complexes: U:E.22, U:E.57, U:H.60, H2O.76 FE.22: 4 residues within 4Å: Chain V: E.22, E.57, H.60, N.105 4 PLIP interactions: 3 interactions with chain V, 1 Ligand-Water interactions Metal complexes: V:E.22, V:E.57, V:H.60, H2O.79 FE.23: 4 residues within 4Å: Chain W: E.22, E.57, H.60, N.105 4 PLIP interactions: 3 interactions with chain W, 1 Ligand-Water interactions Metal complexes: W:E.22, W:E.57, W:H.60, H2O.83 FE.24: 4 residues within 4Å: Chain X: E.22, E.57, H.60, N.105 4 PLIP interactions: 3 interactions with chain X, 1 Ligand-Water interactions Metal complexes: X:E.22, X:E.57, X:H.60, H2O.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mubarak, S.M.M. et al., Biochemical Characterization of Caenorhabditis elegans Ferritins. To Be Published

Release Date

2023-05-24

Peptides

Ferritin: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

D
E

E
F

F
G

G
H

H
I

I
J

J
K

K
L

L
M

M
N

N
O

O
P

P
Q

Q
R

R
S

S
T

T
U

U
V

V
W

W
X

X
Y

Ferritin

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