SMTL ID : 8cxi.1

Structures of Zika Virus in Complex with Antibodies Targeting E Dimer Epitopes and Basis for Neutralization Efficacy

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-2-2-mer

Ligands

2 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.1: 8 residues within 4Å: Chain A: G.285, M.286, N.289 Chain C: F.103, Y.104, Y.105, S.107 Chain D: S.58 5 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D, 1 interactions with chain A Hydrogen bonds: C:Y.104, D:S.58, D:S.58, A:T.291, C:Y.104 Hydrophobic interactions: C:F.103 NAG-NAG-BMA-FUC.2: 8 residues within 4Å: Chain E: G.285, M.286, V.288, N.289 Chain G: F.103, Y.105, S.107 Chain H: S.58 3 PLIP interactions: 2 interactions with chain H, 1 interactions with chain G Hydrogen bonds: H:S.58, H:S.58 Hydrophobic interactions: G:F.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, W. et al., Structures of Zika Virus in Complex with Antibodies Targeting E Dimer Epitopes and Basis for Neutralization Efficacy. To Be Published

Release Date

2023-06-07

Peptides

Ankyrin repeat family A protein 2,Envelope E protein: AEI
Membrane M protein: BFJ
A11 heavy chain: CG
A11 light chain: DH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
B

I
C

B
D

F
E

J
F

C
H

G
h

D
L

H
l

Ankyrin repeat family A protein 2,Envelope E protein

Membrane M protein

A11 heavy chain

A11 light chain

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