SMTL ID : 8czk.2 (1 other biounit)

Human LanCL1 bound to GSH and Dhb-Erk peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

monomer

Ligands

1 x GLY- PHE- LEU- DBU- GLU- TYR: Deb-Erk peptide(Non-covalent)

GLY-PHE-LEU-DBU-GLU-TYR.1: 17 residues within 4Å: Chain A: Y.82, Y.173, W.229, Y.230, E.232, Y.234, H.239, P.283, C.284, D.287, L.292, C.296, H.297, C.342, E.394 Ligands: ZN.2, GSH.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.82, A:Y.82, A:W.229, A:Y.234, A:P.283, A:L.292 Hydrogen bonds: A:E.232 pi-Stacking: A:Y.230

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: C.296, C.342, H.343 Ligands: GLY-PHE-LEU-DBU-GLU-TYR.1, GSH.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.296, A:C.342, A:H.343

1 x GSH: GLUTATHIONE(Non-covalent)

GSH.3: 17 residues within 4Å: Chain A: R.24, Y.82, L.292, H.294, C.296, H.297, K.337, C.342, H.343, R.384, P.386, D.387, E.394 Ligands: GLY-PHE-LEU-DBU-GLU-TYR.1, GLY-PHE-LEU-DBU-GLU-TYR.1, GLY-PHE-LEU-DBU-GLU-TYR.1, ZN.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.337, A:D.387, A:E.394 Water bridges: A:R.384 Salt bridges: A:R.24, A:H.294, A:K.337, A:H.343, A:R.384

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ongpipattanakul, C. et al., The mechanism of thia-Michael addition catalyzed by LanC enzymes. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-01-25

Peptides

Glutathione S-transferase LANCL1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Glutathione S-transferase LANCL1

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