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SMTL ID : 8d0f.1
Human SARM1 TIR domain bound to NB-2-ADPR
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.74 Å
Oligo State
homo-dimer
Ligands
2 x
Q0U
:
[[(3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-[4-[[methyl-[2,2,2-tris(fluoranyl)ethylcarbamoyl]amino]methyl]pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate
(Non-covalent)
Q0U.1:
13 residues within 4Å:
Chain A:
S.10
,
Y.11
,
R.12
,
R.13
,
D.37
,
V.38
,
L.41
,
F.46
,
L.50
,
K.71
,
W.81
,
E.85
Chain B:
E.129
15
PLIP interactions
:
15 interactions with chain A
Hydrogen bonds:
A:I.9
,
A:Y.11
,
A:R.13
,
A:R.13
,
A:R.13
Water bridges:
A:R.12
,
A:N.14
,
A:D.37
,
A:K.71
Salt bridges:
A:R.12
,
A:K.71
,
A:K.71
pi-Cation interactions:
A:R.13
Halogen bonds:
A:R.13
,
A:L.41
Q0U.2:
14 residues within 4Å:
Chain A:
E.129
Chain B:
F.8
,
S.10
,
Y.11
,
R.12
,
R.13
,
D.37
,
V.38
,
L.41
,
F.46
,
L.50
,
K.71
,
W.81
,
E.85
16
PLIP interactions
:
16 interactions with chain B
Hydrophobic interactions:
B:L.50
Hydrogen bonds:
B:I.9
,
B:Y.11
,
B:R.13
,
B:R.13
,
B:R.13
,
B:D.37
Water bridges:
B:I.9
,
B:N.14
,
B:D.37
Salt bridges:
B:R.12
,
B:R.13
,
B:K.71
,
B:K.71
pi-Cation interactions:
B:R.13
Halogen bonds:
B:L.41
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Bratkowski, M. et al., Uncompetitive, adduct-forming SARM1 inhibitors are neuroprotective in preclinical models of nerve injury and disease. Neuron (2022)
Release Date
2022-09-21
Peptides
NAD(+) hydrolase SARM1:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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NAD(+) hydrolase SARM1
Toggle Identical (AB)
Related Entries With Identical Sequence
8d0c.1
|
8d0d.1
|
8d0e.1
|
8d0g.1
|
8d0h.1
|
8d0i.1
|
8d0j.1
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