SMTL ID : 8d0w.1

Human FUT9 bound to H-Type 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.33 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 12 residues within 4Å: Chain A: R.88, P.90, F.91, Q.92, H.113, L.114, F.115, N.116, Y.310, K.311, S.312 Chain B: A.246 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.114 Hydrogen bonds: A:Y.310 Water bridges: A:H.113 NAG-NAG.6: 12 residues within 4Å: Chain A: A.246 Chain B: R.88, P.90, F.91, Q.92, H.113, L.114, F.115, N.116, Y.310, K.311, S.312 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.114 Hydrogen bonds: B:Y.310 Water bridges: B:H.113

2 x NAG- GAL- FUC: alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-GAL-FUC.2: 9 residues within 4Å: Chain A: F.36, Q.38, R.74, L.99, E.100, H.104, Y.131, N.209, F.292 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.74, A:R.74, A:Q.38, A:Q.38, A:Y.131, A:Y.131 Water bridges: A:F.36, A:Q.38, A:E.100, A:E.100, A:E.100, A:E.100, A:E.100 Salt bridges: A:R.74 NAG-GAL-FUC.7: 9 residues within 4Å: Chain B: F.36, Q.38, R.74, L.99, E.100, H.104, Y.131, N.209, F.292 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.74, B:R.74, B:Q.38, B:Q.38, B:Y.131, B:Y.131 Water bridges: B:F.36, B:Q.38, B:E.100, B:E.100, B:E.100, B:E.100, B:E.100 Salt bridges: B:R.74

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: V.156, S.157, N.158, R.165, K.219 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.157, A:N.158 Water bridges: A:N.158, A:N.209, A:N.209, A:N.209 Salt bridges: A:R.165, A:K.219 SO4.4: 3 residues within 4Å: Chain A: P.290, R.291, F.292 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.290, A:F.292 Water bridges: A:R.291 Salt bridges: A:R.291 SO4.8: 5 residues within 4Å: Chain B: V.156, S.157, N.158, R.165, K.219 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:S.157, B:N.158 Water bridges: B:N.158, B:N.209, B:N.209, B:N.209 Salt bridges: B:R.165, B:K.219 SO4.9: 3 residues within 4Å: Chain B: P.290, R.291, F.292 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:P.290, B:F.292 Water bridges: B:R.291 Salt bridges: B:R.291

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain A: P.102, R.122, H.212, K.213 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.212, A:K.213 Water bridges: A:R.122, A:W.321 GOL.10: 4 residues within 4Å: Chain B: P.102, R.122, H.212, K.213 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.212, B:K.213 Water bridges: B:R.122, B:W.321

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kadirvelraj, R. et al., Structural basis for Lewis antigen synthesis by the alpha 1,3-fucosyltransferase FUT9. Nat.Chem.Biol. (2023)

Release Date

2023-05-24

Peptides

4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9

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