SMTL ID : 8d1q.1

Crystal structure of Plasmodium falciparum GRP78-NBD in complex with 8-Aminoadenosine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x 3BH: (2R,3R,4S,5R)-2-(6,8-diaminopurin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol(Non-covalent)

3BH.1: 12 residues within 4Å: Chain A: G.217, G.245, E.246, E.283, K.286, R.287, S.290, G.354, S.355, R.357, I.358, D.381 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.283, A:K.286, A:K.286, A:R.287, A:S.290, A:R.357, A:D.381 Salt bridges: A:D.381

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 8 residues within 4Å: Chain A: G.29, T.30, T.31, Y.32, G.216, G.217, G.218, T.219 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:T.30, A:T.30, A:T.31, A:G.217, A:G.218, A:T.219, A:T.219 Water bridges: A:K.88, A:G.216 SO4.3: 1 residues within 4Å: Chain A: K.263 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.263, A:K.263, A:N.264 Salt bridges: A:K.263 SO4.4: 1 residues within 4Å: Chain A: R.251 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mrozek, A. et al., A non-traditional crystal-based compound screening method targeting the ATP binding site of Plasmodium falciparum GRP78 for identification of novel nucleoside analogues. Front Mol Biosci (2022)

Release Date

2023-05-31

Peptides

Chaperone DnaK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Chaperone DnaK

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