SMTL ID : 8d1r.1

Crystal structure of acetyltransferase Eis from Mycobacterium tuberculosis in complex with inhibitor SGT520

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

homo-hexamer

Ligands

6 x PVF: 1-{3-[(4-chlorophenyl)methoxy]phenyl}methanamine(Non-covalent)

PVF.1: 12 residues within 4Å: Chain A: W.33, D.46, I.48, A.53, W.56, R.57, L.83, M.85, S.103, F.104, E.421, F.422 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.48, A:W.56, A:W.56, A:F.104 Hydrogen bonds: A:S.103, A:E.421, A:E.421, A:F.422 PVF.3: 12 residues within 4Å: Chain B: W.33, D.46, I.48, A.53, W.56, R.57, L.83, M.85, S.103, F.104, E.421, F.422 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:I.48, B:W.56, B:W.56, B:F.104 Hydrogen bonds: B:S.103, B:E.421, B:E.421, B:F.422 PVF.5: 12 residues within 4Å: Chain C: W.33, D.46, I.48, A.53, W.56, R.57, L.83, M.85, S.103, F.104, E.421, F.422 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:I.48, C:W.56, C:W.56, C:F.104 Hydrogen bonds: C:S.103, C:E.421, C:E.421, C:F.422 PVF.7: 12 residues within 4Å: Chain D: W.33, D.46, I.48, A.53, W.56, R.57, L.83, M.85, S.103, F.104, E.421, F.422 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:I.48, D:W.56, D:W.56, D:F.104 Hydrogen bonds: D:S.103, D:E.421 PVF.9: 12 residues within 4Å: Chain E: W.33, D.46, I.48, A.53, W.56, R.57, L.83, M.85, S.103, F.104, E.421, F.422 6 PLIP interactions: 6 interactions with chain E Hydrophobic interactions: E:I.48, E:W.56, E:W.56, E:F.104 Hydrogen bonds: E:S.103, E:E.421 PVF.11: 12 residues within 4Å: Chain F: W.33, D.46, I.48, A.53, W.56, R.57, L.83, M.85, S.103, F.104, E.421, F.422 6 PLIP interactions: 6 interactions with chain F Hydrophobic interactions: F:I.48, F:W.56, F:W.56, F:F.104 Hydrogen bonds: F:S.103, F:E.421

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: A.367, E.368, E.370, R.396, T.397, K.398 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.367, A:K.398 GOL.4: 6 residues within 4Å: Chain B: A.367, E.368, E.370, R.396, T.397, K.398 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.367, B:K.398 GOL.6: 6 residues within 4Å: Chain C: A.367, E.368, E.370, R.396, T.397, K.398 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.367, C:K.398 GOL.8: 6 residues within 4Å: Chain D: A.367, E.368, E.370, R.396, T.397, K.398 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:A.367, D:E.370, D:K.398 GOL.10: 6 residues within 4Å: Chain E: A.367, E.368, E.370, R.396, T.397, K.398 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:A.367, E:E.370, E:K.398 GOL.12: 6 residues within 4Å: Chain F: A.367, E.368, E.370, R.396, T.397, K.398 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:A.367, F:E.370, F:K.398

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pang, A.H. et al., Discovery of substituted benzyloxy-benzylamine inhibitors of acetyltransferase Eis and their anti-mycobacterial activity. Eur.J.Med.Chem. (2022)

Release Date

2022-09-14

Peptides

N-acetyltransferase Eis: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

N-acetyltransferase Eis

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