SMTL ID : 8d1w.1

Crystal structure of Plasmodium falciparum GRP78 in complex with (2R,3R,4S,5R)-2-(6-amino-8-((2-chlorobenzyl)amino)-9H-purin-9-yl)-5-(hydroxymethyl)tetrahydrofuran-3,4-diol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x HFY: 8-{[(2-chlorophenyl)methyl]amino}adenosine(Non-covalent)

HFY.1: 13 residues within 4Å: Chain A: Y.32, G.217, G.245, E.246, E.283, K.286, R.287, S.290, G.354, S.355, R.357, I.358, D.381 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.286, A:K.286, A:R.287, A:S.290, A:R.357, A:D.381, A:D.381

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 8 residues within 4Å: Chain A: G.29, T.30, T.31, Y.32, G.216, G.217, G.218, T.219 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.30, A:T.30, A:T.31, A:G.217, A:G.218, A:T.219, A:T.219 Water bridges: A:G.216 SO4.3: 1 residues within 4Å: Chain A: K.263 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.263, A:K.263, A:K.263, A:N.264 Salt bridges: A:K.263

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mrozek, A. et al., Targeting Plasmodium falciparum GRP78: nucleoside analogues as agents against the malaria chaperone. Frontiers in Molecular Bioscience (2022)

Release Date

2023-05-31

Peptides

Chaperone DnaK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Chaperone DnaK

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