SMTL ID : 8d23.1

Crystal structure of acetyltransferase Eis from Mycobacterium tuberculosis in complex with inhibitor SGT529

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

homo-hexamer

Ligands

6 x PVU: 1-{2-[(3-chlorophenyl)methoxy]phenyl}-N-[(pyridin-3-yl)methyl]methanamine(Non-covalent)

PVU.1: 12 residues within 4Å: Chain A: W.33, F.44, D.46, F.47, A.53, W.56, R.57, L.83, M.85, S.103, F.104, F.422 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.44, A:D.46, A:A.53, A:W.56, A:L.83, A:L.83, A:F.104 pi-Stacking: A:W.56 PVU.3: 12 residues within 4Å: Chain B: W.33, F.44, D.46, F.47, A.53, W.56, R.57, L.83, M.85, S.103, F.104, F.422 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:F.44, B:D.46, B:A.53, B:W.56, B:L.83, B:L.83, B:F.104 pi-Stacking: B:W.56 PVU.5: 12 residues within 4Å: Chain C: W.33, F.44, D.46, F.47, A.53, W.56, R.57, L.83, M.85, S.103, F.104, F.422 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:F.44, C:D.46, C:A.53, C:W.56, C:L.83, C:L.83, C:F.104 pi-Stacking: C:W.56 PVU.7: 12 residues within 4Å: Chain D: W.33, F.44, D.46, F.47, A.53, W.56, R.57, L.83, M.85, S.103, F.104, F.422 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:F.44, D:D.46, D:A.53, D:W.56, D:L.83, D:L.83, D:F.104 pi-Stacking: D:W.56 PVU.9: 12 residues within 4Å: Chain E: W.33, F.44, D.46, F.47, A.53, W.56, R.57, L.83, M.85, S.103, F.104, F.422 8 PLIP interactions: 8 interactions with chain E Hydrophobic interactions: E:F.44, E:D.46, E:A.53, E:W.56, E:L.83, E:L.83, E:F.104 pi-Stacking: E:W.56 PVU.11: 12 residues within 4Å: Chain F: W.33, F.44, D.46, F.47, A.53, W.56, R.57, L.83, M.85, S.103, F.104, F.422 8 PLIP interactions: 8 interactions with chain F Hydrophobic interactions: F:F.44, F:D.46, F:A.53, F:W.56, F:L.83, F:L.83, F:F.104 pi-Stacking: F:W.56

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: H.125, R.126, A.129, R.317, M.319, R.373 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.317, A:R.317, A:M.319, A:R.373 Water bridges: A:A.122, A:R.126 GOL.4: 6 residues within 4Å: Chain B: H.125, R.126, A.129, R.317, M.319, R.373 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.317, B:R.317, B:M.319, B:R.373 Water bridges: B:A.122, B:R.126 GOL.6: 6 residues within 4Å: Chain C: H.125, R.126, A.129, R.317, M.319, R.373 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:R.317, C:R.317, C:M.319, C:R.373 Water bridges: C:A.122, C:R.126 GOL.8: 6 residues within 4Å: Chain D: H.125, R.126, A.129, R.317, M.319, R.373 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:R.317, D:R.317, D:M.319, D:R.373 Water bridges: D:A.122, D:R.126 GOL.10: 6 residues within 4Å: Chain E: H.125, R.126, A.129, R.317, M.319, R.373 6 PLIP interactions: 6 interactions with chain E Hydrogen bonds: E:R.317, E:R.317, E:M.319, E:R.373 Water bridges: E:A.122, E:R.126 GOL.12: 6 residues within 4Å: Chain F: H.125, R.126, A.129, R.317, M.319, R.373 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:R.317, F:R.317, F:M.319, F:R.373 Water bridges: F:A.122, F:R.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pang, A.H. et al., Discovery of substituted benzyloxy-benzylamine inhibitors of acetyltransferase Eis and their anti-mycobacterial activity. Eur.J.Med.Chem. (2022)

Release Date

2022-09-14

Peptides

N-acetyltransferase Eis: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

N-acetyltransferase Eis

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