SMTL ID : 8d2z.1 (1 other biounit)

Crystal Structure of a Metallo-beta-lactamase superfamily protein from Burkholderia cenocepacia

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.87, H.89, H.174, D.193 Ligands: OXM.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.87, A:H.89, A:H.174, A:D.193

1 x OXM: OXAMIC ACID(Non-covalent)

OXM.2: 10 residues within 4Å: Chain A: P.42, H.87, H.89, V.91, R.92, H.174, D.193, Y.202, R.230 Ligands: ZN.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.92, A:R.230, A:R.230 Water bridges: A:Y.202, A:Y.202 Salt bridges: A:H.89, A:H.174, A:R.230

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: E.153, R.154, E.155 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: R.317 Ligands: MRD.5 Ligand excluded by PLIP

1 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.5: 10 residues within 4Å: Chain A: L.268, S.298, F.301, D.302, R.311, W.313, R.317, D.320, M.321 Ligands: CL.4 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.268, A:F.301, A:W.313, A:D.320, A:M.321 Hydrogen bonds: A:R.311, A:R.317, A:R.317

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Crystal Structure of a Metallo-beta-lactamase superfamily protein from Burkholderia cenocepacia. to be published

Release Date

2023-07-05

Peptides

Metallo-beta-lactamase superfamily protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Metallo-beta-lactamase superfamily protein

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