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SMTL ID : 8d3e.1
Crystal structure of human Apoptosis-Inducing Factor (AIF) W196A mutant complexed with 6-fluoroquinolin-4-amine
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.38 Å
Oligo State
homo-dimer
Ligands
2 x
FAD
:
FLAVIN-ADENINE DINUCLEOTIDE
(Non-covalent)
FAD.1:
41 residues within 4Å:
Chain A:
I.61
,
G.62
,
G.63
,
G.64
,
T.65
,
A.66
,
A.67
,
V.86
,
S.87
,
E.88
,
D.89
,
R.96
,
P.97
,
L.99
,
S.100
,
K.101
,
K.155
,
K.156
,
V.157
,
A.183
,
T.184
,
G.185
,
G.186
,
F.208
,
R.209
,
K.210
,
L.235
,
E.238
,
N.327
,
L.330
,
G.361
,
D.362
,
E.377
,
H.378
,
H.379
,
D.380
,
A.382
,
F.406
,
W.407
,
S.408
Ligands:
QDI.2
31
PLIP interactions
:
31 interactions with chain A
Hydrophobic interactions:
A:R.96
,
A:L.99
,
A:F.208
,
A:R.209
,
A:L.235
Hydrogen bonds:
A:G.63
,
A:T.65
,
A:T.65
,
A:A.66
,
A:E.88
,
A:E.88
,
A:R.96
,
A:R.96
,
A:K.101
,
A:V.157
,
A:V.157
,
A:K.210
,
A:D.362
,
A:H.378
,
A:H.379
,
A:W.407
,
A:W.407
Water bridges:
A:G.64
,
A:T.65
,
A:A.67
,
A:G.185
,
A:R.209
,
A:H.379
,
A:A.382
Salt bridges:
A:R.96
,
A:R.209
FAD.5:
39 residues within 4Å:
Chain B:
I.61
,
G.62
,
G.63
,
G.64
,
T.65
,
A.66
,
A.67
,
V.86
,
S.87
,
E.88
,
D.89
,
R.96
,
P.97
,
L.99
,
S.100
,
K.101
,
K.155
,
K.156
,
V.157
,
A.183
,
T.184
,
G.185
,
G.186
,
F.208
,
R.209
,
L.235
,
E.238
,
N.327
,
L.330
,
G.361
,
D.362
,
E.377
,
H.378
,
H.379
,
D.380
,
A.382
,
F.406
,
W.407
,
S.408
27
PLIP interactions
:
27 interactions with chain B
Hydrophobic interactions:
B:R.96
,
B:F.208
,
B:L.235
Hydrogen bonds:
B:G.63
,
B:T.65
,
B:A.66
,
B:E.88
,
B:E.88
,
B:D.89
,
B:R.96
,
B:R.96
,
B:K.101
,
B:V.157
,
B:R.209
,
B:D.362
,
B:H.378
,
B:H.379
,
B:W.407
Water bridges:
B:G.64
,
B:A.67
,
B:S.87
,
B:G.185
,
B:G.186
,
B:E.329
,
B:H.379
,
B:A.382
Salt bridges:
B:R.96
1 x
QDI
:
6-fluoroquinolin-4-amine
(Non-covalent)
QDI.2:
11 residues within 4Å:
Chain A:
S.100
,
K.101
,
F.234
,
L.235
,
E.238
,
E.377
,
H.378
,
F.406
,
W.407
,
S.408
Ligands:
FAD.1
3
PLIP interactions
:
3 interactions with chain A
Hydrophobic interactions:
A:F.234
Hydrogen bonds:
A:W.407
,
A:S.408
2 x
EDO
:
1,2-ETHANEDIOL
(Non-functional Binders)
EDO.3:
12 residues within 4Å:
Chain A:
E.337
,
R.346
,
V.347
,
N.348
,
Q.352
,
A.353
,
R.373
Chain B:
E.337
,
R.346
,
V.347
,
N.348
,
R.373
6
PLIP interactions
:
4 interactions with chain B
,
2 interactions with chain A
Hydrogen bonds:
B:V.347
,
B:R.373
,
A:Q.352
Water bridges:
B:N.348
,
B:N.348
,
A:N.348
EDO.6:
7 residues within 4Å:
Chain B:
V.384
,
L.388
,
K.398
,
P.399
,
Y.400
,
W.401
,
H.402
2
PLIP interactions
:
2 interactions with chain B
Hydrogen bonds:
B:W.401
,
B:H.402
1 x
CL
:
CHLORIDE ION
(Non-functional Binders)
CL.4:
4 residues within 4Å:
Chain A:
L.191
,
P.259
,
I.292
,
V.293
Ligand excluded by PLIP
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Brosey, C.A. et al., Integrating early structural selection into chemical library screening for drug discovery with high-throughput small-angle X-ray scattering (SAXS). To Be Published
Release Date
2023-11-08
Peptides
Apoptosis-inducing factor 1, mitochondrial:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Apoptosis-inducing factor 1, mitochondrial
Related Entries With Identical Sequence
5kvh.1
|
8d3g.1
|
8d3h.1
|
8d3i.1
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