SMTL ID : 8d43.1

Cryo-EM structure of human Kidney Glucosidase II

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 8 residues within 4Å: Chain A: N.97, P.146, Y.147, G.369, P.370, D.374, Q.378, Q.735 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.735

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain B: R.91, D.94, V.96, D.98, D.104, E.105 6 PLIP interactions: 6 interactions with chain B Metal complexes: B:R.91, B:D.94, B:V.96, B:D.98, B:D.104, B:E.105 CA.3: 6 residues within 4Å: Chain B: Q.50, D.53, Y.55, D.57, D.63, E.64 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:Q.50, B:D.53, B:Y.55, B:D.57, B:E.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lyu, M. et al., Cryo-EM structure of human Kidney Glucosidase II. To Be Published

Release Date

2022-11-16

Peptides

Neutral alpha-glucosidase AB: A
Glucosidase 2 subunit beta: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Neutral alpha-glucosidase AB

Glucosidase 2 subunit beta

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