SMTL ID : 8d47.1 (1 other biounit)

fp.006 Fab in complex with SARS-CoV-2 Fusion Peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 10 residues within 4Å: Chain A: A.9, T.10, V.85, Y.87, G.101, G.102, K.104 Chain B: Q.39, K.43, G.44 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.10, A:T.10, B:K.43

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: T.165, E.166, Q.167, D.168 Chain B: V.180, H.181, T.182 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.166, A:E.166 Water bridges: A:D.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bianchini, F. et al., Human neutralizing antibodies to cold linear epitopes and subdomain 1 of the SARS-CoV-2 spike glycoprotein. Sci Immunol (2023)

Release Date

2022-12-21

Peptides

fp.006 light chain: A
fp.006 heavy chain: B
SARS-CoV-2 fusion peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
C

fp.006 light chain

fp.006 heavy chain

SARS-CoV-2 fusion peptide

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