SMTL ID : 8d4x.1

Structure of the human UBR5 HECT-type E3 ubiquitin ligase in a dimeric form

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.1186, C.1215, C.1218, C.1239 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1186, A:C.1215, A:C.1218, A:C.1239 ZN.2: 5 residues within 4Å: Chain A: C.1218, C.1222, C.1241, C.1247, T.1249 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1218, A:C.1222, A:C.1241, A:C.1247 ZN.3: 4 residues within 4Å: Chain A: C.1203, C.1206, H.1223, H.1226 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1203, A:C.1206, A:H.1223, A:H.1226 ZN.4: 4 residues within 4Å: Chain B: C.1186, C.1215, C.1218, C.1239 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1186, B:C.1215, B:C.1218, B:C.1239 ZN.5: 5 residues within 4Å: Chain B: C.1218, C.1222, C.1241, C.1247, T.1249 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1218, B:C.1222, B:C.1241, B:C.1247 ZN.6: 4 residues within 4Å: Chain B: C.1203, C.1206, H.1223, H.1226 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1203, B:C.1206, B:H.1223, B:H.1226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., Structure of the human UBR5 E3 ubiquitin ligase. Structure (2023)

Release Date

2023-04-19

Peptides

E3 ubiquitin-protein ligase UBR5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E3 ubiquitin-protein ligase UBR5