SMTL ID : 8d55.1

Closed state of SARS-CoV-2 BA.2 variant spike protein

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
homo-trimer
Ligands
21 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
3 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
21 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Zhang, J. et al., Structural and functional characteristics of the SARS-CoV-2 Omicron subvariant BA.2 spike protein. Nat.Struct.Mol.Biol. (2023)
Release Date
2023-06-07
Peptides
Spike glycoprotein: ABC
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C

Spike glycoprotein

Related Entries With Identical Sequence

8d56.1 | 8d5a.1